TOPORSLP Gene (Pseudogene)

Topoisomerase I Binding, Arginine And Serine Rich Like, Pseudogene

GC09P104270
GIFtS:
6
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Aliases for TOPORSLP Gene

Aliases for TOPORSLP Gene

  • Topoisomerase I Binding, Arginine And Serine Rich Like, Pseudogene 2 3 5
  • Topoisomerase I Binding, Arginine And Serine Rich Like, Pseudogene 1 2 3
  • Topoisomerase I Binding, Arginine/Serine-Rich Like, Pseudogene 1 2 3
  • Topoisomerase I Binding, Arginine/Serine-Rich, E3 Ubiquitin Protein Ligase Pseudogene 3
  • Topoisomerase I Binding, Arginine/Serine-Rich Pseudogene 3
  • TOPORSLP1 3
  • TOPORSLP 5

External Ids for TOPORSLP Gene

Previous HGNC Symbols for TOPORSLP Gene

  • TOPORSLP1

Previous GeneCards Identifiers for TOPORSLP Gene

  • GC09P107034

Summaries for TOPORSLP Gene

GeneCards Summary for TOPORSLP Gene

TOPORSLP (Topoisomerase I Binding, Arginine And Serine Rich Like, Pseudogene) is a Pseudogene.

Additional gene information for TOPORSLP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TOPORSLP Gene

Genomics for TOPORSLP Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TOPORSLP Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J104270 Enhancer 0.6 ENCODE 600.7 +0.2 207 0.1 REST SP1 CEBPA CEBPB FOXA2 YY1 HNF4A NFIL3 RXRA HLF LOC105376194 TOPORSLP piR-33998-012 SMC2 OR13F1
GH09J104280 Enhancer 0.5 Ensembl 0.4 +10.1 10073 0.2 OSR2 KLF8 HIC1 JUND FEZF1 KLF16 LOC105376194 TOPORSLP piR-33998-012 SMC2 OR13F1
GH09J104254 Enhancer 0.3 Ensembl 0.4 -14.9 -14927 1.8 PRDM10 TRIM28 TOPORSLP piR-55083-004 SMC2 OR13F1
GH09J104256 Enhancer 0.3 Ensembl 0.4 -13.7 -13727 0.2 TRIM28 TOPORSLP piR-55083-004 SMC2 OR13F1
GH09J104261 Enhancer 0.2 Ensembl 0.4 -8.4 -8427 0.4 TOPORSLP piR-55083-004 SMC2 OR13F1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TOPORSLP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TOPORSLP Gene

Genomic Locations for TOPORSLP Gene
chr9:104,270,228-104,286,955
(GRCh38/hg38)
Size:
16,728 bases
Orientation:
Plus strand
chr9:107,032,509-107,049,236
(GRCh37/hg19)
Size:
16,728 bases
Orientation:
Plus strand

Genomic View for TOPORSLP Gene

Genes around TOPORSLP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TOPORSLP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOPORSLP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TOPORSLP Gene

Proteins for TOPORSLP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TOPORSLP Gene

No Post-translational modifications

No data available for DME Specific Peptides for TOPORSLP Gene

Domains & Families for TOPORSLP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TOPORSLP Gene

Function for TOPORSLP Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TOPORSLP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOPORSLP Gene

Localization for TOPORSLP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TOPORSLP Gene

Pathways & Interactions for TOPORSLP Gene

PathCards logo

SuperPathways for TOPORSLP Gene

No Data Available

Gene Ontology (GO) - Biological Process for TOPORSLP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TOPORSLP Gene

Drugs & Compounds for TOPORSLP Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TOPORSLP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TOPORSLP Gene

3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TOPORSLP Gene

No ASD Table

Relevant External Links for TOPORSLP Gene

GeneLoc Exon Structure for
TOPORSLP

Expression for TOPORSLP Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TOPORSLP Gene

mRNA expression in normal human tissues for TOPORSLP Gene
mRNA expression by GTEx for TOPORSLP Gene

mRNA differential expression in normal tissues according to GTEx for TOPORSLP Gene

This gene is overexpressed in Testis (x50.1).
genes like me logo Genes that share expression patterns with TOPORSLP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TOPORSLP Gene

Orthologs for TOPORSLP Gene

Evolution for TOPORSLP Gene

ENSEMBL:
Gene Tree for TOPORSLP (if available)
TreeFam:
Gene Tree for TOPORSLP (if available)

No data available for Orthologs for TOPORSLP Gene

Paralogs for TOPORSLP Gene

No data available for Paralogs for TOPORSLP Gene

Variants for TOPORSLP Gene

Additional Variant Information for TOPORSLP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TOPORSLP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TOPORSLP Gene

Disorders for TOPORSLP Gene

No disorders were found for TOPORSLP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TOPORSLP Gene

Publications for TOPORSLP Gene

No publications were found for TOPORSLP Gene.

No data available for Mastermind for TOPORSLP Gene

Products for TOPORSLP Gene

Sources for TOPORSLP Gene