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Aliases for TOP1P1 Gene

Subcategory (RNA class) for TOP1P1 Gene


Aliases for TOP1P1 Gene

  • DNA Topoisomerase I Pseudogene 1 2 3 5
  • Topoisomerase (DNA) I Pseudogene 1 3

External Ids for TOP1P1 Gene

ORGUL Members for TOP1P1 Gene

Previous GeneCards Identifiers for TOP1P1 Gene

  • GC01U990170
  • GC01P169574
  • GC01P142530

Summaries for TOP1P1 Gene

GeneCards Summary for TOP1P1 Gene

TOP1P1 (DNA Topoisomerase I Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for TOP1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TOP1P1 Gene

Genomics for TOP1P1 Gene

GeneHancer (GH) Regulatory Elements for TOP1P1 Gene

Promoters and enhancers for TOP1P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J171313 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.3 -24.7 -24714 1.8 FOXA2 PKNOX1 CLOCK ATF1 ARID4B SIN3A YY1 ZNF143 ATF7 RUNX3 FMO4 TOP1P1
GH01J171343 Enhancer 0.8 ENCODE 0.4 +5.4 5434 2.2 SOX13 FOXA2 TAF1 MAX CEBPG ZNF644 RAD21 YY1 HNF4G NR2F6 ENSG00000225704 SRP14P4 GC01M171347 FMO4 TOP1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TOP1P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TOP1P1 gene promoter:

Genomic Locations for TOP1P1 Gene

Genomic Locations for TOP1P1 Gene
2,431 bases
Plus strand

Genomic View for TOP1P1 Gene

Genes around TOP1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TOP1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOP1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOP1P1 Gene

Function for TOP1P1 Gene

Molecular function for TOP1P1 Gene

GENATLAS Biochemistry:
DNA topoisomerase I,pseudogene 1,with antisense RNA transcripts

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOP1P1 Gene

Localization for TOP1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TOP1P1 Gene

Pathways & Interactions for TOP1P1 Gene

SuperPathways for TOP1P1 Gene

No Data Available

Interacting Proteins for TOP1P1 Gene

Gene Ontology (GO) - Biological Process for TOP1P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TOP1P1 Gene

Drugs & Compounds for TOP1P1 Gene

No Compound Related Data Available

Transcripts for TOP1P1 Gene

mRNA/cDNA for TOP1P1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TOP1P1 Gene

Topoisomerase (DNA) I pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TOP1P1 Gene

No ASD Table

Relevant External Links for TOP1P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TOP1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TOP1P1 Gene

mRNA expression in normal human tissues for TOP1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TOP1P1 Gene:


SOURCE GeneReport for Unigene cluster for TOP1P1 Gene:

genes like me logo Genes that share expression patterns with TOP1P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TOP1P1 Gene

Orthologs for TOP1P1 Gene

Evolution for TOP1P1 Gene

Gene Tree for TOP1P1 (if available)
Gene Tree for TOP1P1 (if available)

No data available for Orthologs for TOP1P1 Gene

Paralogs for TOP1P1 Gene

No data available for Paralogs for TOP1P1 Gene

Variants for TOP1P1 Gene

Sequence variations from dbSNP and Humsavar for TOP1P1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000319188 -- 171,338,499(+) C/T upstream_transcript_variant
rs1003089110 -- 171,339,813(+) G/A non_coding_transcript_variant
rs1003887760 -- 171,339,006(+) T/C non_coding_transcript_variant
rs1004257765 -- 171,339,369(+) C/T non_coding_transcript_variant
rs1004822728 -- 171,338,935(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TOP1P1 Gene

Variant ID Type Subtype PubMed ID
esv28731 CNV gain+loss 19812545
nsv1002423 CNV loss 25217958
nsv548188 CNV loss 21841781
nsv831882 CNV loss 17160897
nsv946501 CNV duplication 23825009

Additional Variant Information for TOP1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TOP1P1 Gene

Disorders for TOP1P1 Gene

Additional Disease Information for TOP1P1

No disorders were found for TOP1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TOP1P1 Gene

Publications for TOP1P1 Gene

  1. Molecular structures of two human DNA topoisomerase I retrosequences. (PMID: 2170234) Yang GC … Richter A (Gene 1990) 3 58

Products for TOP1P1 Gene

Sources for TOP1P1 Gene

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