Aliases for TOLLIP-AS1 Gene

Subcategory (RNA class) for TOLLIP-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TOLLIP-AS1 Gene

  • TOLLIP Antisense RNA 1 (Head To Head) 2 3 5
  • TOLLIP-AS1 2 5 165
  • NONHSAG007378.2 91
  • HSALNG0082091 164
  • CTD-2245O6.1 3

External Ids for TOLLIP-AS1 Gene

Previous GeneCards Identifiers for TOLLIP-AS1 Gene

  • GC11P001332
  • GC11P001311
  • GC11P001312
  • GC11P001321
  • GC11P001322
  • GC11P001320
  • GC11P001319
  • GC11P001313
  • GC11P001314
  • GC11P001315
  • GC11P001316
  • GC11P001317

Summaries for TOLLIP-AS1 Gene

GeneCards Summary for TOLLIP-AS1 Gene

TOLLIP-AS1 (TOLLIP Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TOLLIP-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TOLLIP-AS1 Gene

Genomics for TOLLIP-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TOLLIP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001301 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 609 -2.9 -2891 10.7 HNRNPL GATAD2A CTCF TFE3 NFKBIZ ZNF692 POLR2A BACH1 LARP7 ZNF143 TOLLIP TOLLIP-AS1 TSPAN4 MOB2 TMEM80 SNORA52 PHRF1 ENSG00000255237 PIDD1 CD151
GH11J001382 Promoter/Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas 11.5 +73.6 73558 1.5 CREB1 ZNF629 ZNF692 BACH1 JUND ZIC2 POLR2A PATZ1 PKNOX1 ZFX TOLLIP TOLLIP-AS1 MOB2 DUSP8 BRSK2 IFITM10 HSALNG0082101 HSALNG0082100
GH11J001269 Enhancer 0.8 Ensembl dbSUPER 19.6 -38.2 -38197 1 ZNF629 PRDM1 ZIC2 PATZ1 REST SP2 NFE2 ZNF316 PRDM6 TRIM28 TOLLIP-AS1 TOLLIP piR-37535 lnc-MUC5B-3 MUC5B
GH11J001261 Promoter/Enhancer 1.6 ENCODE CraniofacialAtlas dbSUPER 7.6 -46.9 -46917 2 SP1 HNRNPL CREB1 ZNF629 TFE3 POLR2A LARP7 ZNF143 ZIC2 RBFOX2 TOLLIP-AS1 NONHSAG007376.2 lnc-MUC5B-3 MUC5B TOLLIP
GH11J001390 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.3 +80.9 80927 3.7 PRDM10 ZNF692 ZIC2 RBFOX2 POLR2A PATZ1 REST EZH2 ZFX NRF1 BRSK2 TOLLIP-AS1 piR-47801-001 MOB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TOLLIP-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TOLLIP-AS1 Gene

Genomic Locations for TOLLIP-AS1 Gene
chr11:1,309,707-1,318,521
(GRCh38/hg38)
Size:
8,815 bases
Orientation:
Plus strand
chr11:1,330,938-1,331,937
(GRCh37/hg19)
Size:
1,000 bases
Orientation:
Plus strand

Genomic View for TOLLIP-AS1 Gene

Genes around TOLLIP-AS1 on UCSC Golden Path with GeneCards custom track
TOLLIP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TOLLIP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOLLIP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOLLIP-AS1 Gene

Proteins for TOLLIP-AS1 Gene

Post-translational modifications for TOLLIP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TOLLIP-AS1 Gene

Domains & Families for TOLLIP-AS1 Gene

Gene Families for TOLLIP-AS1 Gene

genes like me logo Genes that share domains with TOLLIP-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TOLLIP-AS1 Gene

Function for TOLLIP-AS1 Gene

Phenotypes From GWAS Catalog for TOLLIP-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOLLIP-AS1 Gene

Localization for TOLLIP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TOLLIP-AS1 Gene

Pathways & Interactions for TOLLIP-AS1 Gene

PathCards logo

SuperPathways for TOLLIP-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TOLLIP-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TOLLIP-AS1 Gene

Drugs & Compounds for TOLLIP-AS1 Gene

No Compound Related Data Available

Transcripts for TOLLIP-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TOLLIP-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CC5E_9606 lncRNA 1000 2

HGNC: 27403,

RefSeq: NR_029409,

URS000016FF9D_9606 lncRNA 939 2

Ensembl: ENST00000530897 (view in UCSC) ,

LNCipedia: TOLLIP-AS1:3,

URS00009BCDE8_9606 lncRNA 1154 2

LNCipedia: TOLLIP-AS1:2,

NONCODE: NONHSAT017400.2,

URS00008C184D_9606 lncRNA 1000 2

LncBook: HSALNT0170975,

LNCipedia: TOLLIP-AS1:1,

URS0000D5BF07_9606 lncRNA 3011 1

LNCipedia: TOLLIP-AS1:5,

TOLLIP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TOLLIP-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TOLLIP-AS1 Gene

No ASD Table

Relevant External Links for TOLLIP-AS1 Gene

GeneLoc Exon Structure for
TOLLIP-AS1

Expression for TOLLIP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TOLLIP-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TOLLIP-AS1

genes like me logo Genes that share expression patterns with TOLLIP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TOLLIP-AS1 Gene

Orthologs for TOLLIP-AS1 Gene

Evolution for TOLLIP-AS1 Gene

ENSEMBL:
Gene Tree for TOLLIP-AS1 (if available)
TreeFam:
Gene Tree for TOLLIP-AS1 (if available)

No data available for Orthologs for TOLLIP-AS1 Gene

Paralogs for TOLLIP-AS1 Gene

No data available for Paralogs for TOLLIP-AS1 Gene

Variants for TOLLIP-AS1 Gene

Additional dbSNP identifiers (rs#s) for TOLLIP-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TOLLIP-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1014n100 CNV gain 25217958
dgv1537n54 CNV loss 21841781
esv2669189 CNV deletion 23128226
esv2743878 CNV deletion 23290073
esv2759794 CNV loss 17122850
nsv1053427 CNV gain 25217958
nsv467637 CNV loss 19166990
nsv552927 CNV loss 21841781

Additional Variant Information for TOLLIP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TOLLIP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TOLLIP-AS1 Gene

Disorders for TOLLIP-AS1 Gene

Additional Disease Information for TOLLIP-AS1

No disorders were found for TOLLIP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TOLLIP-AS1 Gene

Publications for TOLLIP-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for TOLLIP-AS1 Gene

Sources for TOLLIP-AS1 Gene