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Aliases for TOLLIP-AS1 Gene

Subcategory (RNA class) for TOLLIP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TOLLIP-AS1 Gene

  • TOLLIP Antisense RNA 1 (Head To Head) 2 3 5
  • CTD-2245O6.1 3

External Ids for TOLLIP-AS1 Gene

Previous GeneCards Identifiers for TOLLIP-AS1 Gene

  • GC11P001332
  • GC11P001311
  • GC11P001312
  • GC11P001313
  • GC11P001314
  • GC11P001315
  • GC11P001316
  • GC11P001317

Summaries for TOLLIP-AS1 Gene

GeneCards Summary for TOLLIP-AS1 Gene

TOLLIP-AS1 (TOLLIP Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TOLLIP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TOLLIP-AS1 Gene

Genomics for TOLLIP-AS1 Gene

GeneHancer (GH) Regulatory Elements for TOLLIP-AS1 Gene

Promoters and enhancers for TOLLIP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I001301 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.1 -2.9 -2892 10.7 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 TOLLIP TSPAN4 TMEM80 SNORA52 PHRF1 ENSG00000255237 PIDD1 BRSK2 TOLLIP-AS1 DUSP8
GH11I001382 Enhancer 1.3 FANTOM5 Ensembl ENCODE 16.9 +73.5 73483 1.7 PKNOX1 KLF17 ZNF335 GLIS2 EGR1 ATF7 CREM EGR2 SP3 ZBTB11 GC11M001373 GC11P001384 TOLLIP-AS1 TOLLIP MOB2 DUSP8 BRSK2 IFITM10
GH11I001297 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 7.9 -10.6 -10605 3.9 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 ATF7 RXRA SP5 PIDD1 DRD4 TMEM80 GATD1 ENSG00000255142 ENSG00000255158 BRSK2 TOLLIP-AS1 TOLLIP DUSP8
GH11I001389 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 5.2 +81.2 81181 3.2 HDGF SIN3A DEAF1 ZNF335 GLIS2 RCOR1 ATF7 YY2 NFYC ZNF398 BRSK2 GC11P001391 TOLLIP-AS1
GH11I001261 Enhancer 1.3 Ensembl ENCODE dbSUPER 7.6 -46.8 -46822 1.8 PKNOX1 ATF1 ARID4B SIN3A DMAP1 POLR2B GLIS2 ZNF143 ATF7 SP3 TOLLIP-AS1 GC11M001267 GC11P001257 GC11P001258 MUC5B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TOLLIP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TOLLIP-AS1 Gene

Genomic Locations for TOLLIP-AS1 Gene
chr11:1,309,708-1,310,707
(GRCh38/hg38)
Size:
1,000 bases
Orientation:
Plus strand
chr11:1,330,938-1,331,937
(GRCh37/hg19)

Genomic View for TOLLIP-AS1 Gene

Genes around TOLLIP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TOLLIP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOLLIP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOLLIP-AS1 Gene

Proteins for TOLLIP-AS1 Gene

Post-translational modifications for TOLLIP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TOLLIP-AS1 Gene

Domains & Families for TOLLIP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TOLLIP-AS1 Gene

Function for TOLLIP-AS1 Gene

Phenotypes From GWAS Catalog for TOLLIP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOLLIP-AS1 Gene

Localization for TOLLIP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TOLLIP-AS1 Gene

Pathways & Interactions for TOLLIP-AS1 Gene

SuperPathways for TOLLIP-AS1 Gene

No Data Available

Interacting Proteins for TOLLIP-AS1 Gene

Gene Ontology (GO) - Biological Process for TOLLIP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TOLLIP-AS1 Gene

Drugs & Compounds for TOLLIP-AS1 Gene

No Compound Related Data Available

Transcripts for TOLLIP-AS1 Gene

mRNA/cDNA for TOLLIP-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TOLLIP-AS1 Gene

No ASD Table

Relevant External Links for TOLLIP-AS1 Gene

GeneLoc Exon Structure for
TOLLIP-AS1
ECgene alternative splicing isoforms for
TOLLIP-AS1

Expression for TOLLIP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TOLLIP-AS1 Gene

genes like me logo Genes that share expression patterns with TOLLIP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TOLLIP-AS1 Gene

Orthologs for TOLLIP-AS1 Gene

Evolution for TOLLIP-AS1 Gene

ENSEMBL:
Gene Tree for TOLLIP-AS1 (if available)
TreeFam:
Gene Tree for TOLLIP-AS1 (if available)

No data available for Orthologs for TOLLIP-AS1 Gene

Paralogs for TOLLIP-AS1 Gene

No data available for Paralogs for TOLLIP-AS1 Gene

Variants for TOLLIP-AS1 Gene

Sequence variations from dbSNP and Humsavar for TOLLIP-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000040467 -- 1,308,036(+) C/T upstream_transcript_variant
rs1000646276 -- 1,309,505(+) G/A upstream_transcript_variant
rs1001619386 -- 1,310,169(+) G/T non_coding_transcript_variant
rs1001767604 -- 1,307,775(+) G/A upstream_transcript_variant
rs1002838967 -- 1,310,603(+) T/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TOLLIP-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1014n100 CNV gain 25217958
dgv1537n54 CNV loss 21841781
esv2669189 CNV deletion 23128226
esv2743878 CNV deletion 23290073
esv2759794 CNV loss 17122850
nsv1053427 CNV gain 25217958
nsv467637 CNV loss 19166990
nsv552927 CNV loss 21841781

Additional Variant Information for TOLLIP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TOLLIP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TOLLIP-AS1 Gene

Disorders for TOLLIP-AS1 Gene

Additional Disease Information for TOLLIP-AS1

No disorders were found for TOLLIP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TOLLIP-AS1 Gene

Publications for TOLLIP-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for TOLLIP-AS1 Gene

Sources for TOLLIP-AS1 Gene

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