Aliases for TOB1-AS1 Gene

Data sources for TOB1-AS1 Gene:

RNA type for TOB1-AS1 Gene

lncRNA

Aliases for TOB1-AS1 Gene

External Ids for TOB1-AS1 Gene

Previous GeneCards Identifiers for TOB1-AS1 Gene

  • GC17P048946

Summaries for TOB1-AS1 Gene

GeneCards Summary for TOB1-AS1 Gene

TOB1-AS1 (TOB1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TOB1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TOB1-AS1 Gene

Genomics for TOB1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TOB1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TOB1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TOB1-AS1 Gene

Latest Assembly
chr17:50,866,535-50,910,774
(GRCh38/hg38)
Size:
44,240 bases
Orientation:
Plus strand

Previous Assembly
chr17:48,944,040-48,945,732
(GRCh37/hg19 by Entrez Gene)
Size:
1,693 bases
Orientation:
Plus strand

chr17:48,944,040-48,987,098
(GRCh37/hg19 by Ensembl)
Size:
43,059 bases
Orientation:
Plus strand

Genomic View for TOB1-AS1 Gene

Genes around TOB1-AS1 on UCSC Golden Path with GeneCards custom track
TOB1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TOB1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOB1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOB1-AS1 Gene

Proteins for TOB1-AS1 Gene

Post-translational modifications for TOB1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TOB1-AS1 Gene

Domains & Families for TOB1-AS1 Gene

Gene Families for TOB1-AS1 Gene

genes like me logo Genes that share domains with TOB1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TOB1-AS1 Gene

Function for TOB1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOB1-AS1 Gene

Localization for TOB1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TOB1-AS1 Gene

Pathways & Interactions for TOB1-AS1 Gene

PathCards logo

SuperPathways for TOB1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TOB1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TOB1-AS1 Gene

Drugs & Compounds for TOB1-AS1 Gene

No Compound Related Data Available

Transcripts for TOB1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TOB1-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008BA7AE_9606 lncRNA 695 4

Ensembl: ENST00000514358 (view in UCSC) ,

LncBook: HSALNT0242480,

LNCipedia: TOB1-AS1:7,

NONCODE: NONHSAT054731.2,

URS00008BDF62_9606 lncRNA 547 4

Ensembl: ENST00000523470 (view in UCSC) ,

LncBook: HSALNT0242473,

LNCipedia: TOB1-AS1:5,

NONCODE: NONHSAT054729.2,

URS00008BF1C2_9606 lncRNA 1353 3

Ensembl: ENST00000416263 (view in UCSC) ,

LncBook: HSALNT0242468,

LNCipedia: TOB1-AS1:2,

URS0000EF24EF_9606 lncRNA 2403 1

Ensembl: ENST00000671267 (view in UCSC) ,

URS000075F043_9606 lncRNA 1415 1

RefSeq: NR_038458,

TOB1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TOB1-AS1 Gene

5 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TOB1-AS1 Gene

No ASD Table

Relevant External Links for TOB1-AS1 Gene

GeneLoc Exon Structure for
TOB1-AS1

Expression for TOB1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TOB1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TOB1-AS1

SOURCE GeneReport for Unigene cluster for TOB1-AS1 Gene:

Hs.641441
genes like me logo Genes that share expression patterns with TOB1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TOB1-AS1 Gene

Orthologs for TOB1-AS1 Gene

Evolution for TOB1-AS1 Gene

ENSEMBL:
Gene Tree for TOB1-AS1 (if available)
TreeFam:
Gene Tree for TOB1-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for TOB1-AS1

No data available for Orthologs for TOB1-AS1 Gene

Paralogs for TOB1-AS1 Gene

No data available for Paralogs for TOB1-AS1 Gene

Variants for TOB1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TOB1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for TOB1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TOB1-AS1
Leiden Open Variation Database (LOVD)
TOB1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TOB1-AS1 Gene

Disorders for TOB1-AS1 Gene

Additional Disease Information for TOB1-AS1

No disorders were found for TOB1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TOB1-AS1 Gene

Publications for TOB1-AS1 Gene

  1. Long non-coding RNA TOB1-AS1 modulates cell proliferation, apoptosis, migration and invasion through miR-23a/NEU1 axis via Wnt/b-catenin pathway in gastric cancer. (PMID: 31799657) Jiang K … Zhou LQ (European review for medical and pharmacological sciences 2019) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for TOB1-AS1 Gene

Sources for TOB1-AS1 Gene