Aliases for TNS1-AS1 Gene

Data sources for TNS1-AS1 Gene:

RNA type for TNS1-AS1 Gene

lncRNA

Aliases for TNS1-AS1 Gene

External Ids for TNS1-AS1 Gene

Summaries for TNS1-AS1 Gene

GeneCards Summary for TNS1-AS1 Gene

TNS1-AS1 (TNS1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TNS1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TNS1-AS1 Gene

Genomics for TNS1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TNS1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J217953 Enhancer 0.5 dbSUPER 250.7 -1.3 -1319 2.6 CTCF TCF7L2 NFIB SP1 GATA2 CREB1 EGR2 RFX1 NR2F2 HSALNG0022218 Hsa-Mir-574_5p-039 TNS1-AS1 TNS1 HSALNG0022217
GH02J217956 Enhancer 0.5 ENCODE dbSUPER 250.7 +0.7 735 1.4 RXRA NR2F2 HSALNG0022218 Hsa-Mir-574_5p-039 TNS1-AS1 lnc-RUFY4-4 TNS1
GH02J217926 Promoter/Enhancer 2.5 VISTA EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 -20.5 -20485 18.3 JUND ZMYM3 ATF3 POLR2A ZIC2 CHD4 YY1 HOMEZ CTCF ZNF217 TNS1 SLC11A1 TNS1-AS1 PNKD CXCR2 ARPC2 TMBIM1 HSALNG0022217 MIR6809
GH02J217897 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 -49.5 -49465 18 ZNF600 SSRP1 JUND ZMYM3 KLF9 CEBPA ATF3 ZIC2 CHD4 YY1 TNS1 CNOT9 AAMP ZNF142 SLC11A1 STK36 TNS1-AS1 USP37 RUFY4 RNF25
GH02J217829 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -119.1 -119143 15 IKZF1 NCOR1 NFIC ZIC2 NONO FOXA1 ZFP64 SIN3A ARNT KLF9 TNS1 CNOT9 TNS1-AS1 USP37 PNKD SNORA115 5MWI_A-092 HSALNG0022208 TNP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TNS1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TNS1-AS1 Gene

Latest Assembly
chr2:217,956,044-217,993,831
(GRCh38/hg38)
Size:
37,788 bases
Orientation:
Plus strand

Previous Assembly
chr2:218,843,430-218,857,338
(GRCh37/hg19 by Entrez Gene)
Size:
13,909 bases
Orientation:
Plus strand

chr2:218,843,430-218,857,338
(GRCh37/hg19 by Ensembl)
Size:
13,909 bases
Orientation:
Plus strand

Genomic View for TNS1-AS1 Gene

Genes around TNS1-AS1 on UCSC Golden Path with GeneCards custom track
TNS1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TNS1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNS1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNS1-AS1 Gene

Proteins for TNS1-AS1 Gene

Post-translational modifications for TNS1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNS1-AS1 Gene

Domains & Families for TNS1-AS1 Gene

Gene Families for TNS1-AS1 Gene

genes like me logo Genes that share domains with TNS1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TNS1-AS1 Gene

Function for TNS1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNS1-AS1 Gene

Localization for TNS1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNS1-AS1 Gene

Pathways & Interactions for TNS1-AS1 Gene

PathCards logo

SuperPathways for TNS1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TNS1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TNS1-AS1 Gene

Drugs & Compounds for TNS1-AS1 Gene

No Compound Related Data Available

Transcripts for TNS1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TNS1-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00001C30D5_9606 lncRNA 568 3

RefSeq: NR_135524,

Ensembl: ENST00000450996 (view in UCSC) ,

NONCODE: NONHSAT076873.2,

URS0000EF382A_9606 lncRNA 1922 1

Ensembl: ENST00000654642 (view in UCSC) ,

URS00008C0755_9606 lncRNA 1295 3

LncBook: HSALNT0047211,

LNCipedia: lnc-RUFY4-1:3,

NONCODE: NONHSAT076871.2,

URS00008B7FD8_9606 lncRNA 802 3

LncBook: HSALNT0047224,

LNCipedia: lnc-RUFY4-1:4,

NONCODE: NONHSAT076876.2,

URS00008BA77D_9606 lncRNA 610 3

LncBook: HSALNT0047223,

LNCipedia: lnc-RUFY4-1:2,

NONCODE: NONHSAT076875.2,

TNS1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TNS1-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TNS1-AS1 Gene

No ASD Table

Relevant External Links for TNS1-AS1 Gene

GeneLoc Exon Structure for
TNS1-AS1

Expression for TNS1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNS1-AS1 Gene

Orthologs for TNS1-AS1 Gene

Evolution for TNS1-AS1 Gene

ENSEMBL:
Gene Tree for TNS1-AS1 (if available)
TreeFam:
Gene Tree for TNS1-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for TNS1-AS1

No data available for Orthologs for TNS1-AS1 Gene

Paralogs for TNS1-AS1 Gene

No data available for Paralogs for TNS1-AS1 Gene

Variants for TNS1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TNS1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for TNS1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNS1-AS1
Leiden Open Variation Database (LOVD)
TNS1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNS1-AS1 Gene

Disorders for TNS1-AS1 Gene

Additional Disease Information for TNS1-AS1

Open Targets Platform
Open Targets Platform

No disorders were found for TNS1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNS1-AS1 Gene

Publications for TNS1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for TNS1-AS1 Gene

Products for TNS1-AS1 Gene

Sources for TNS1-AS1 Gene