Aliases for TNRC6C-AS1 Gene

Subcategory (RNA class) for TNRC6C-AS1 Gene


Quality Score for this RNA gene is


Aliases for TNRC6C-AS1 Gene

  • TNRC6C Antisense RNA 1 2 3 5
  • TNRC6C-AS1 2 170
  • NONHSAG022872 94
  • HSALNG0119000 169
  • TMC6 3
  • Lnc 3

External Ids for TNRC6C-AS1 Gene

Previous GeneCards Identifiers for TNRC6C-AS1 Gene

  • GC17M076105

Summaries for TNRC6C-AS1 Gene

GeneCards Summary for TNRC6C-AS1 Gene

TNRC6C-AS1 (TNRC6C Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TNRC6C-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TNRC6C-AS1 Gene

Genomics for TNRC6C-AS1 Gene

GeneHancer (GH) Regulatory Elements for TNRC6C-AS1 Gene

Promoters and enhancers for TNRC6C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J078110 Enhancer 0.7 Ensembl dbSUPER 750.6 +1.1 1098 1 ZNF692 POLR2A ZNF10 SCRT1 ZFP69B GLIS1 TNRC6C-AS1 C17orf99 SYNGR2 AFMID TK1 RNU6-625P lnc-TMC8-1 TMC6
GH17J078120 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.9 -16.2 -16151 14.8 GTF3C2 ZNF24 SP1 ZBTB40 CTCF SREBF1 LCORL MLX RBPJ SMARCE1 TMC8 TMC6 lnc-TK1-4 USP36 BIRC5 ENGASE SYNGR2 TK1 AFMID CANT1
GH17J078136 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 -27.9 -27933 6.3 GTF3C2 ZBTB40 SP1 CTCF SMARCE1 RBPJ POLR2A TCF7L2 ZNF362 L3MBTL2 KY994051 USP36 SYNGR2 AFMID TK1 TNRC6C-AS1 TMC8 TMC6 NONHSAG022878.2
GH17J078170 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12 -62.3 -62260 6.1 SIN3A CTCF RBPJ POLR2A MYC RAD21 MAX ZNF148 NKRF GTF2F1 NONHSAG022880.2 AFMID ENGASE C17orf99 TNRC6C-AS1 USP36 CANT1 SYNGR2 TK1 TMC6
GH17J078410 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -302.9 -302929 8.2 CTCF LCORL TEAD4 NFIB SP1 CBFA2T2 EGR1 IKZF1 ZIC2 RXRA PGS1 SOCS3 DNAH17 TNRC6C-AS1 AFMID TK1 RNU6-638P LOC101928674 CYTH1 USP36
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TNRC6C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TNRC6C-AS1 Gene

Genomic Locations for TNRC6C-AS1 Gene
4,402 bases
Minus strand
4,402 bases
Minus strand

Genomic View for TNRC6C-AS1 Gene

Genes around TNRC6C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNRC6C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNRC6C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNRC6C-AS1 Gene

Proteins for TNRC6C-AS1 Gene

Post-translational modifications for TNRC6C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNRC6C-AS1 Gene

Domains & Families for TNRC6C-AS1 Gene

Gene Families for TNRC6C-AS1 Gene

genes like me logo Genes that share domains with TNRC6C-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TNRC6C-AS1 Gene

Function for TNRC6C-AS1 Gene

Phenotypes From GWAS Catalog for TNRC6C-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNRC6C-AS1 Gene

Localization for TNRC6C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNRC6C-AS1 Gene

Pathways & Interactions for TNRC6C-AS1 Gene

PathCards logo

SuperPathways for TNRC6C-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TNRC6C-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TNRC6C-AS1 Gene

Drugs & Compounds for TNRC6C-AS1 Gene

No Compound Related Data Available

Transcripts for TNRC6C-AS1 Gene

mRNA/cDNA for TNRC6C-AS1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(5) RNACentral transcripts :
(1) LncBook transcripts :
(5) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TNRC6C-AS1 Gene

No ASD Table

Relevant External Links for TNRC6C-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TNRC6C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNRC6C-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TNRC6C-AS1 Gene

This gene is overexpressed in Spleen (x5.6), Brain - Spinal cord (cervical c-1) (x4.2), and Whole Blood (x4.1).
genes like me logo Genes that share expression patterns with TNRC6C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNRC6C-AS1 Gene

Orthologs for TNRC6C-AS1 Gene

Evolution for TNRC6C-AS1 Gene

Gene Tree for TNRC6C-AS1 (if available)
Gene Tree for TNRC6C-AS1 (if available)

No data available for Orthologs for TNRC6C-AS1 Gene

Paralogs for TNRC6C-AS1 Gene

No data available for Paralogs for TNRC6C-AS1 Gene

Variants for TNRC6C-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNRC6C-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs199765733 benign, EPIDERMODYSPLASIA VERRUCIFORMIS 78,113,538(-) G/A upstream_transcript_variant
rs763777731 uncertain-significance, EPIDERMODYSPLASIA VERRUCIFORMIS 78,113,548(-) C/G upstream_transcript_variant
rs79153946 benign, EPIDERMODYSPLASIA VERRUCIFORMIS 78,113,215(-) C/T upstream_transcript_variant
rs1000026329 -- 78,107,351(-) A/C downstream_transcript_variant
rs1000422928 -- 78,110,042(-) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TNRC6C-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833554 CNV gain+loss 17160897

Additional Variant Information for TNRC6C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TNRC6C-AS1 Gene

Disorders for TNRC6C-AS1 Gene

Additional Disease Information for TNRC6C-AS1

No disorders were found for TNRC6C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNRC6C-AS1 Gene

Publications for TNRC6C-AS1 Gene

  1. The long noncoding RNA ROCKI regulates inflammatory gene expression. (PMID: 30918008) Zhang Q … Rana TM (The EMBO journal 2019) 2 3 56
  2. LncRNA TNRC6C-AS1 regulates UNC5B in thyroid cancer to influence cell proliferation, migration, and invasion as a competing endogenous RNA of miR-129-5p. (PMID: 29893424) Hou S … Lin C (Journal of cellular biochemistry 2018) 2 3 56
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for TNRC6C-AS1 Gene

Sources for TNRC6C-AS1 Gene