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Aliases for TNRC6C-AS1 Gene

Subcategory (RNA class) for TNRC6C-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TNRC6C-AS1 Gene

  • TNRC6C Antisense RNA 1 2 3 5

External Ids for TNRC6C-AS1 Gene

ORGUL Members for TNRC6C-AS1 Gene

Previous GeneCards Identifiers for TNRC6C-AS1 Gene

  • GC17M076105

Summaries for TNRC6C-AS1 Gene

GeneCards Summary for TNRC6C-AS1 Gene

TNRC6C-AS1 (TNRC6C Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for TNRC6C-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNRC6C-AS1 Gene

Genomics for TNRC6C-AS1 Gene

GeneHancer (GH) Regulatory Elements for TNRC6C-AS1 Gene

Promoters and enhancers for TNRC6C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I078112 Enhancer 1.1 ENCODE dbSUPER 555.8 -1.8 -1830 2.5 HDGF ZFP64 ARID4B SIN3A ZNF2 ZNF48 SLC30A9 POLR2B GLIS2 E2F8 TNRC6C-AS1 USP36 AFMID TK1 C17orf99 SYNGR2 RNU6-625P GC17P078107 TMC6 TMC8
GH17I078110 Enhancer 0.6 dbSUPER 550.8 +0.8 773 1.2 SCRT1 ZNF10 ZFP69B POLR2A ZNF692 SCRT2 GLIS1 SUPT5H TNRC6C-AS1 C17orf99 SYNGR2 AFMID TK1 RNU6-625P GC17P078107 GC17P078108 TMC6
GH17I078120 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.9 -16.2 -16151 14.8 MLX ZFP64 YBX1 FEZF1 DMAP1 SLC30A9 ZNF143 SP3 NFYC MEF2D TMC8 TMC6 USP36 SYNGR2 TK1 AFMID TNRC6C-AS1 ENGASE PGS1 TNRC6C
GH17I078170 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -62.3 -62260 6.1 HDGF SIN3A IRF4 YY1 GLIS2 E2F8 ZNF143 KLF7 RUNX3 PAF1 AFMID C17orf99 TNRC6C-AS1 SYNGR2 TK1 TMC6 PGS1 SOCS3 GC17P078174
GH17I078410 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -302.9 -302929 8.2 HDAC1 ATF1 PKNOX1 SMAD1 NFIB ZNF195 RAD21 TCF12 EGR1 SCRT2 PGS1 SOCS3 USP36 DNAH17 TNRC6C-AS1 AFMID TK1 RNU6-638P LOC101928674 CYTH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TNRC6C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TNRC6C-AS1 Gene

Genomic Locations for TNRC6C-AS1 Gene
chr17:78,107,398-78,111,799
(GRCh38/hg38)
Size:
4,402 bases
Orientation:
Minus strand
chr17:76,103,479-76,107,880
(GRCh37/hg19)

Genomic View for TNRC6C-AS1 Gene

Genes around TNRC6C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNRC6C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNRC6C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNRC6C-AS1 Gene

Proteins for TNRC6C-AS1 Gene

Post-translational modifications for TNRC6C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNRC6C-AS1 Gene

Domains & Families for TNRC6C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNRC6C-AS1 Gene

Function for TNRC6C-AS1 Gene

Phenotypes From GWAS Catalog for TNRC6C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNRC6C-AS1 Gene

Localization for TNRC6C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNRC6C-AS1 Gene

Pathways & Interactions for TNRC6C-AS1 Gene

SuperPathways for TNRC6C-AS1 Gene

No Data Available

Interacting Proteins for TNRC6C-AS1 Gene

Gene Ontology (GO) - Biological Process for TNRC6C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNRC6C-AS1 Gene

Drugs & Compounds for TNRC6C-AS1 Gene

No Compound Related Data Available

Transcripts for TNRC6C-AS1 Gene

mRNA/cDNA for TNRC6C-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TNRC6C-AS1 Gene

No ASD Table

Relevant External Links for TNRC6C-AS1 Gene

GeneLoc Exon Structure for
TNRC6C-AS1
ECgene alternative splicing isoforms for
TNRC6C-AS1

Expression for TNRC6C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNRC6C-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TNRC6C-AS1 Gene

This gene is overexpressed in Spleen (x5.6), Brain - Spinal cord (cervical c-1) (x4.2), and Whole Blood (x4.1).
genes like me logo Genes that share expression patterns with TNRC6C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNRC6C-AS1 Gene

Orthologs for TNRC6C-AS1 Gene

Evolution for TNRC6C-AS1 Gene

ENSEMBL:
Gene Tree for TNRC6C-AS1 (if available)
TreeFam:
Gene Tree for TNRC6C-AS1 (if available)

No data available for Orthologs for TNRC6C-AS1 Gene

Paralogs for TNRC6C-AS1 Gene

No data available for Paralogs for TNRC6C-AS1 Gene

Variants for TNRC6C-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNRC6C-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs199765733 benign, EPIDERMODYSPLASIA VERRUCIFORMIS 78,113,538(-) G/A upstream_transcript_variant
rs79153946 benign, EPIDERMODYSPLASIA VERRUCIFORMIS 78,113,215(-) C/T upstream_transcript_variant
rs1000026329 -- 78,107,351(-) A/C downstream_transcript_variant
rs1000422928 -- 78,110,042(-) G/C non_coding_transcript_variant
rs1000650702 -- 78,107,537(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TNRC6C-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833554 CNV gain+loss 17160897

Additional Variant Information for TNRC6C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNRC6C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TNRC6C-AS1 Gene

Disorders for TNRC6C-AS1 Gene

Additional Disease Information for TNRC6C-AS1

No disorders were found for TNRC6C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNRC6C-AS1 Gene

Publications for TNRC6C-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TNRC6C-AS1 Gene

Sources for TNRC6C-AS1 Gene

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