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Aliases for TNKS2-AS1 Gene

Subcategory (RNA class) for TNKS2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TNKS2-AS1 Gene

  • TNKS2 Antisense RNA 1 (Head To Head) 2 3 5
  • TNKS2 Antisense RNA 1 2

External Ids for TNKS2-AS1 Gene

Previous GeneCards Identifiers for TNKS2-AS1 Gene

  • GC10M093545

Summaries for TNKS2-AS1 Gene

GeneCards Summary for TNKS2-AS1 Gene

TNKS2-AS1 (TNKS2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TNKS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNKS2-AS1 Gene

Genomics for TNKS2-AS1 Gene

GeneHancer (GH) Regulatory Elements for TNKS2-AS1 Gene

Promoters and enhancers for TNKS2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J091795 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 645.2 -0.4 -402 5.4 SP1 ZFX ELF3 MNT NKRF POLR2A ZNF687 NFRKB AHR TFE3 TNKS2-AS1 TNKS2 GC10M091797 PIR42497 HECTD2 SRP9P1 GC10M091801
GH10J091883 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 37.5 -87.4 -87422 5.1 HDGF ZNF652 SP1 ZNF121 ZSCAN21 AHR MAFK TFE3 ZBTB7A YY1 TNKS2-AS1 TNKS2 BTAF1 NUDT9P1 HECTD2 FGFBP3 ENSG00000273497 GC10M091835
GH10J091628 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 15.2 +167.1 167120 5.9 SP1 ELF3 MNT POLR2A CEBPG AHR BACH1 TFE3 TRIM24 PPARG PPP1R3C TNKS2-AS1 HECTD2 TNKS2 HECTD2-AS1
GH10J091587 Enhancer 1.8 VISTA Ensembl ENCODE dbSUPER 14.7 +207.1 207072 7.3 ZKSCAN8 CBFA2T2 BACH1 MAFK TRIM24 SP7 ZNF548 KLF14 PRDM1 ZNF639 RPP30 BTAF1 HECTD2 TNKS2-AS1 PPP1R3C TNKS2 HECTD2-AS1 LOC105378433
GH10J091683 Enhancer 0.7 Ensembl ENCODE 30.9 +114.0 114038 1.6 SP1 FOS POLR2A RCOR1 JUND TNKS2-AS1 TNKS2 HECTD2 GAPDHP28 GC10M091739
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TNKS2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TNKS2-AS1 Gene

Genomic Locations for TNKS2-AS1 Gene
chr10:91,782,839-91,798,291
(GRCh38/hg38)
Size:
15,453 bases
Orientation:
Minus strand
chr10:93,542,596-93,558,048
(GRCh37/hg19)
Size:
15,453 bases
Orientation:
Minus strand

Genomic View for TNKS2-AS1 Gene

Genes around TNKS2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNKS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNKS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNKS2-AS1 Gene

Proteins for TNKS2-AS1 Gene

Post-translational modifications for TNKS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNKS2-AS1 Gene

Domains & Families for TNKS2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNKS2-AS1 Gene

Function for TNKS2-AS1 Gene

Phenotypes From GWAS Catalog for TNKS2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNKS2-AS1 Gene

Localization for TNKS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNKS2-AS1 Gene

Pathways & Interactions for TNKS2-AS1 Gene

PathCards logo

SuperPathways for TNKS2-AS1 Gene

No Data Available

Interacting Proteins for TNKS2-AS1 Gene

Gene Ontology (GO) - Biological Process for TNKS2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNKS2-AS1 Gene

Drugs & Compounds for TNKS2-AS1 Gene

No Compound Related Data Available

Transcripts for TNKS2-AS1 Gene

mRNA/cDNA for TNKS2-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Unigene Clusters for TNKS2-AS1 Gene

TNKS2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNKS2-AS1 Gene

No ASD Table

Relevant External Links for TNKS2-AS1 Gene

GeneLoc Exon Structure for
TNKS2-AS1
ECgene alternative splicing isoforms for
TNKS2-AS1

Expression for TNKS2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNKS2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TNKS2-AS1 Gene

This gene is overexpressed in Testis (x9.3).

SOURCE GeneReport for Unigene cluster for TNKS2-AS1 Gene:

Hs.291528
genes like me logo Genes that share expression patterns with TNKS2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNKS2-AS1 Gene

Orthologs for TNKS2-AS1 Gene

Evolution for TNKS2-AS1 Gene

ENSEMBL:
Gene Tree for TNKS2-AS1 (if available)
TreeFam:
Gene Tree for TNKS2-AS1 (if available)

No data available for Orthologs for TNKS2-AS1 Gene

Paralogs for TNKS2-AS1 Gene

No data available for Paralogs for TNKS2-AS1 Gene

Variants for TNKS2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNKS2-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000306649 -- 91,797,644(-) T/C intron_variant
rs1000383920 -- 91,785,162(-) G/T intron_variant
rs1000643824 -- 91,798,635(-) C/G upstream_transcript_variant
rs1000715473 -- 91,798,493(-) A/C upstream_transcript_variant
rs1000839515 -- 91,784,693(-) T/C intron_variant

Additional Variant Information for TNKS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNKS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNKS2-AS1 Gene

Disorders for TNKS2-AS1 Gene

Additional Disease Information for TNKS2-AS1

No disorders were found for TNKS2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNKS2-AS1 Gene

Publications for TNKS2-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

No data available for External Links for TNKS2-AS1 Gene

Products for TNKS2-AS1 Gene

Sources for TNKS2-AS1 Gene

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