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Aliases for TNFRSF1A Gene

Aliases for TNFRSF1A Gene

  • TNF Receptor Superfamily Member 1A 2 3 5
  • Tumor Necrosis Factor Receptor Superfamily Member 1A 3 4
  • TNF-R1 3 4
  • TNF-RI 3 4
  • TNFR-I 3 4
  • TNFR1 3 4
  • TNFAR 3 4
  • P55 3 4
  • P60 3 4
  • Tumor Necrosis Factor Receptor Superfamily, Member 1A 2
  • Tumor Necrosis Factor Receptor 1A Isoform Beta 3
  • Tumor Necrosis Factor Binding Protein 1 3
  • Tumor Necrosis Factor Receptor Type 1 3
  • Tumor Necrosis Factor Receptor Type I 4
  • Tumor Necrosis Factor-Alpha Receptor 3
  • Tumor Necrosis Factor Receptor 1 4
  • CD120a Antigen 4
  • TNF-R-I 3
  • TNF-R55 3
  • CD120a 3
  • TNFR55 3
  • TNFR60 3
  • TNF-R 3
  • P55-R 3
  • TBP1 3
  • FPF 3

External Ids for TNFRSF1A Gene

Previous HGNC Symbols for TNFRSF1A Gene

  • TNFR1

Previous GeneCards Identifiers for TNFRSF1A Gene

  • GC12M006292
  • GC12M006412

Summaries for TNFRSF1A Gene

Entrez Gene Summary for TNFRSF1A Gene

  • This gene encodes a member of the TNF receptor superfamily of proteins. The encoded receptor is found in membrane-bound and soluble forms that interact with membrane-bound and soluble forms, respectively, of its ligand, tumor necrosis factor alpha. Binding of membrane-bound tumor necrosis factor alpha to the membrane-bound receptor induces receptor trimerization and activation, which plays a role in cell survival, apoptosis, and inflammation. Proteolytic processing of the encoded receptor results in release of the soluble form of the receptor, which can interact with free tumor necrosis factor alpha to inhibit inflammation. Mutations in this gene underlie tumor necrosis factor receptor-associated periodic syndrome (TRAPS), characterized by fever, abdominal pain and other features. Mutations in this gene may also be associated with multiple sclerosis in human patients. [provided by RefSeq, Sep 2016]

GeneCards Summary for TNFRSF1A Gene

TNFRSF1A (TNF Receptor Superfamily Member 1A) is a Protein Coding gene. Diseases associated with TNFRSF1A include Periodic Fever, Familial, Autosomal Dominant and Multiple Sclerosis 5. Among its related pathways are Human cytomegalovirus infection and Apoptosis Modulation and Signaling. Gene Ontology (GO) annotations related to this gene include tumor necrosis factor-activated receptor activity. An important paralog of this gene is TNFRSF25.

UniProtKB/Swiss-Prot for TNFRSF1A Gene

  • Receptor for TNFSF2/TNF-alpha and homotrimeric TNFSF1/lymphotoxin-alpha. The adapter molecule FADD recruits caspase-8 to the activated receptor. The resulting death-inducing signaling complex (DISC) performs caspase-8 proteolytic activation which initiates the subsequent cascade of caspases (aspartate-specific cysteine proteases) mediating apoptosis. Contributes to the induction of non-cytocidal TNF effects including anti-viral state and activation of the acid sphingomyelinase.

Gene Wiki entry for TNFRSF1A Gene

Additional gene information for TNFRSF1A Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNFRSF1A Gene

Genomics for TNFRSF1A Gene

GeneHancer (GH) Regulatory Elements for TNFRSF1A Gene

Promoters and enhancers for TNFRSF1A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TNFRSF1A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TNFRSF1A gene promoter:
  • AP-1
  • CREB
  • deltaCREB
  • STAT1
  • STAT1alpha
  • STAT1beta
  • STAT3
  • STAT5A

Genomic Locations for TNFRSF1A Gene

Genomic Locations for TNFRSF1A Gene
chr12:6,328,757-6,342,117
(GRCh38/hg38)
Size:
13,361 bases
Orientation:
Minus strand
chr12:6,437,923-6,451,283
(GRCh37/hg19)
Size:
13,361 bases
Orientation:
Minus strand

Genomic View for TNFRSF1A Gene

Genes around TNFRSF1A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNFRSF1A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNFRSF1A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNFRSF1A Gene

Proteins for TNFRSF1A Gene

  • Protein details for TNFRSF1A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P19438-TNR1A_HUMAN
    Recommended name:
    Tumor necrosis factor receptor superfamily member 1A
    Protein Accession:
    P19438
    Secondary Accessions:
    • A8K4X3
    • B2RDE4
    • B3KPQ1
    • B4DQB7
    • B4E309
    • B5M0B5
    • D3DUR1
    • Q9UCA4

    Protein attributes for TNFRSF1A Gene

    Size:
    455 amino acids
    Molecular mass:
    50495 Da
    Quaternary structure:
    • Binding of TNF to the extracellular domain leads to homotrimerization. The aggregated death domains provide a novel molecular interface that interacts specifically with the death domain of TRADD. Various TRADD-interacting proteins such as TRAFS, RIPK1 and possibly FADD, are recruited to the complex by their association with TRADD. This complex activates at least two distinct signaling cascades, apoptosis and NF-kappa-B signaling. Interacts with BAG4, BABAM2, FEM1B, GRB2, SQSTM1 and TRPC4AP (PubMed:10356400, PubMed:10359574, PubMed:10542291, PubMed:15465831, PubMed:8387891, PubMed:9915703). Interacts directly with NOL3 (via CARD domain); inhibits TNF-signaling pathway (By similarity). Interacts with SH3RF2, TRADD and RIPK1. SH3RF2 facilitates the recruitment of RIPK1 and TRADD to TNFRSF1A in a TNF-alpha-dependent process (PubMed:24130170).
    • (Microbial infection) Interacts with mumps virus protein SH; this interaction inhibits downstream NF-kappa-B pathway activation.
    • (Microbial infection) Interacts with HCV core protein.
    • (Microbial infection) Interacts with human cytomegalovirus/HHV-5 protein UL138.

    Three dimensional structures from OCA and Proteopedia for TNFRSF1A Gene

    Alternative splice isoforms for TNFRSF1A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TNFRSF1A Gene

Post-translational modifications for TNFRSF1A Gene

  • The soluble form is produced from the membrane form by proteolytic processing.
  • Glycosylation at posLast=5454, isoforms=2, 4, 5145, and isoforms=2, 4, 5151
  • Modification sites at PhosphoSitePlus

Antibody Products

Protein Products

No data available for DME Specific Peptides for TNFRSF1A Gene

Domains & Families for TNFRSF1A Gene

Gene Families for TNFRSF1A Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Candidate cardiovascular disease genes
  • CD markers
  • Disease related genes
  • Plasma proteins
  • Predicted membrane proteins
  • Predicted secreted proteins

Suggested Antigen Peptide Sequences for TNFRSF1A Gene

GenScript: Design optimal peptide antigens:
  • Tumor necrosis factor receptor superfamily member 1A (Q6Y4Q7_HUMAN)
  • p60 (TNR1A_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P19438

UniProtKB/Swiss-Prot:

TNR1A_HUMAN :
  • The domain that induces A-SMASE is probably identical to the death domain. The N-SMASE activation domain (NSD) is both necessary and sufficient for activation of N-SMASE.
Domain:
  • The domain that induces A-SMASE is probably identical to the death domain. The N-SMASE activation domain (NSD) is both necessary and sufficient for activation of N-SMASE.
  • Both the cytoplasmic membrane-proximal region and the C-terminal region containing the death domain are involved in the interaction with TRPC4AP.
genes like me logo Genes that share domains with TNFRSF1A: view

Function for TNFRSF1A Gene

Molecular function for TNFRSF1A Gene

UniProtKB/Swiss-Prot Function:
Receptor for TNFSF2/TNF-alpha and homotrimeric TNFSF1/lymphotoxin-alpha. The adapter molecule FADD recruits caspase-8 to the activated receptor. The resulting death-inducing signaling complex (DISC) performs caspase-8 proteolytic activation which initiates the subsequent cascade of caspases (aspartate-specific cysteine proteases) mediating apoptosis. Contributes to the induction of non-cytocidal TNF effects including anti-viral state and activation of the acid sphingomyelinase.
GENATLAS Biochemistry:
tumor necrosis factor receptor superfamily,member 1A,involved at least in two independent pathways,acidic sphingomyelinase controlling expression of multiple TNF-responsive genes,including the apoptotic pathway,neutral sphingomyelinase critical for the inflammatory and proliferative responses induced by TNF

Phenotypes From GWAS Catalog for TNFRSF1A Gene

Gene Ontology (GO) - Molecular Function for TNFRSF1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005031 tumor necrosis factor-activated receptor activity TAS,IEA 2158863
GO:0005515 protein binding IPI,IEA 1087798
GO:0043120 tumor necrosis factor binding IPI 9435233
genes like me logo Genes that share ontologies with TNFRSF1A: view
genes like me logo Genes that share phenotypes with TNFRSF1A: view

Human Phenotype Ontology for TNFRSF1A Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for TNFRSF1A Gene

MGI Knock Outs for TNFRSF1A:

Animal Model Products

CRISPR Products

miRNA for TNFRSF1A Gene

miRTarBase miRNAs that target TNFRSF1A

Clone Products

  • Applied Biological Materials (abm): Clones for TNFRSF1A - Now 50% OFF >
  • * TNFRSF1A as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * TNFRSF1A tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for TNFRSF1A Gene

Localization for TNFRSF1A Gene

Subcellular locations from UniProtKB/Swiss-Prot for TNFRSF1A Gene

Cell membrane; Single-pass type I membrane protein. Golgi apparatus membrane; Single-pass type I membrane protein. Secreted. Note=A secreted form is produced through proteolytic processing.
Isoform 4: Secreted. Note=Lacks a Golgi-retention motif, is not membrane bound and therefore is secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TNFRSF1A gene
Compartment Confidence
plasma membrane 5
extracellular 5
golgi apparatus 5
mitochondrion 4
cytosol 3
nucleus 2
cytoskeleton 1
endoplasmic reticulum 1
endosome 1
lysosome 1

Gene Ontology (GO) - Cellular Components for TNFRSF1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IDA 22801493
GO:0002947 tumor necrosis factor receptor superfamily complex TAS 24966471
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IDA 13130484
GO:0005739 mitochondrion IBA 21873635
genes like me logo Genes that share ontologies with TNFRSF1A: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for TNFRSF1A Gene

Pathways & Interactions for TNFRSF1A Gene

genes like me logo Genes that share pathways with TNFRSF1A: view

SIGNOR curated interactions for TNFRSF1A Gene

Activates:
Inactivates:
Is activated by:
Is inactivated by:

Gene Ontology (GO) - Biological Process for TNFRSF1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003176 aortic valve development ISS --
GO:0003177 pulmonary valve development ISS --
GO:0003332 negative regulation of extracellular matrix constituent secretion ISS --
GO:0006693 prostaglandin metabolic process IEA --
GO:0006915 apoptotic process IEA --
genes like me logo Genes that share ontologies with TNFRSF1A: view

Drugs & Compounds for TNFRSF1A Gene

(69) Drugs for TNFRSF1A Gene - From: DrugBank, PharmGKB, DGIdb, IUPHAR, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Etanercept Approved, Investigational Pharma 434
Infliximab Approved Pharma 445
Tasonermin Approved Pharma Target, agonist 0
Adalimumab Approved Pharma 561
6-[3-(4-Morpholinyl)Propyl]-2-(3-Nitrophenyl)-5-Thioxo-5,6,-Dihydro-7h-Thienol[2',3':4,5]Pyrrolo[1,2-C]Imidazol-7-One Experimental Pharma Target 0

(48) Additional Compounds for TNFRSF1A Gene - From: IUPHAR and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
lymphotoxin-alpha
genes like me logo Genes that share compounds with TNFRSF1A: view

Transcripts for TNFRSF1A Gene

mRNA/cDNA for TNFRSF1A Gene

Unigene Clusters for TNFRSF1A Gene

Tumor necrosis factor receptor superfamily, member 1A:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials (abm): Clones for TNFRSF1A - Now 50% OFF >
  • * TNFRSF1A as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * TNFRSF1A tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

Alternative Splicing Database (ASD) splice patterns (SP) for TNFRSF1A Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^
SP1: - - - - -
SP2: - - - - - - -
SP3: - - - - - - - -
SP4: - -
SP5: - - - -
SP6: - - - - - - - - - -
SP7: - -
SP8: - - -
SP9: - - - - - - - - - -
SP10:
SP11: -
SP12:

ExUns: 12 ^ 13 ^ 14
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

Relevant External Links for TNFRSF1A Gene

GeneLoc Exon Structure for
TNFRSF1A
ECgene alternative splicing isoforms for
TNFRSF1A

Expression for TNFRSF1A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNFRSF1A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TNFRSF1A Gene

This gene is overexpressed in Whole Blood (x6.3).

Protein differential expression in normal tissues from HIPED for TNFRSF1A Gene

This gene is overexpressed in Pancreatic juice (51.7), Platelet (9.7), and Fetal heart (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TNFRSF1A Gene



Protein tissue co-expression partners for TNFRSF1A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TNFRSF1A Gene:

TNFRSF1A

SOURCE GeneReport for Unigene cluster for TNFRSF1A Gene:

Hs.279594

Evidence on tissue expression from TISSUES for TNFRSF1A Gene

  • Blood(4.9)
  • Nervous system(4.9)
  • Muscle(4.5)
  • Lung(4.4)
  • Intestine(4.3)
  • Urine(4.2)
  • Spleen(4.1)
  • Kidney(4)
  • Skin(3.8)
  • Liver(3.4)
  • Heart(2.9)
  • Lymph node(2.9)
  • Bone marrow(2.8)
  • Stomach(2.1)

Phenotype-based relationships between genes and organs from Gene ORGANizer for TNFRSF1A Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • digestive
  • immune
  • integumentary
  • lymphatic
  • nervous
  • reproductive
  • respiratory
  • skeletal muscle
  • skeleton
  • urinary
Regions:
Head and neck:
  • brain
  • ear
  • eye
  • head
Thorax:
  • chest wall
  • esophagus
  • heart
  • heart valve
Abdomen:
  • intestine
  • kidney
  • large intestine
  • liver
  • small intestine
  • stomach
Pelvis:
  • rectum
  • testicle
Limb:
  • ankle
  • digit
  • elbow
  • finger
  • foot
  • hand
  • hip
  • knee
  • lower limb
  • shoulder
  • toe
  • upper limb
  • wrist
General:
  • blood
  • blood vessel
  • lymph node
  • lymph vessel
  • peripheral nerve
  • peripheral nervous system
  • red blood cell
  • skin
  • white blood cell
genes like me logo Genes that share expression patterns with TNFRSF1A: view

No data available for mRNA Expression by UniProt/SwissProt for TNFRSF1A Gene

Orthologs for TNFRSF1A Gene

This gene was present in the common ancestor of chordates.

Orthologs for TNFRSF1A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TNFRSF1A 34 35
  • 98.67 (n)
dog
(Canis familiaris)
Mammalia TNFRSF1A 34 35
  • 82.39 (n)
cow
(Bos Taurus)
Mammalia TNFRSF1A 34 35
  • 76.88 (n)
rat
(Rattus norvegicus)
Mammalia Tnfrsf1a 34
  • 75.15 (n)
mouse
(Mus musculus)
Mammalia Tnfrsf1a 17 34 35
  • 73.24 (n)
oppossum
(Monodelphis domestica)
Mammalia TNFRSF1A 35
  • 42 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TNFRSF1A 35
  • 38 (a)
OneToOne
chicken
(Gallus gallus)
Aves TNFRSF1A 34 35
  • 50.61 (n)
lizard
(Anolis carolinensis)
Reptilia TNFRSF1A 35
  • 31 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tnfrsf1a 34
  • 48.29 (n)
zebrafish
(Danio rerio)
Actinopterygii tnfrsf1a 34 35
  • 45.14 (n)
TNFRSF1A (2 of 2) 35
  • 26 (a)
OneToMany
Species where no ortholog for TNFRSF1A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TNFRSF1A Gene

ENSEMBL:
Gene Tree for TNFRSF1A (if available)
TreeFam:
Gene Tree for TNFRSF1A (if available)
Aminode:
Evolutionary constrained regions (ECRs) for TNFRSF1A: view image

Paralogs for TNFRSF1A Gene

Variants for TNFRSF1A Gene

Sequence variations from dbSNP and Humsavar for TNFRSF1A Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs104895217 pathogenic, TNF receptor-associated periodic fever syndrome (TRAPS), not provided, Familial hibernian fever (FHF) [MIM:142680] 6,334,109(-) A/G 5_prime_UTR_variant, coding_sequence_variant, intron_variant, missense_variant, non_coding_transcript_variant
rs104895218 pathogenic, TNF receptor-associated periodic fever syndrome (TRAPS), Familial hibernian fever (FHF) [MIM:142680] 6,334,099(-) C/T 5_prime_UTR_variant, coding_sequence_variant, intron_variant, missense_variant, non_coding_transcript_variant
rs104895219 pathogenic, not-provided, TNF receptor-associated periodic fever syndrome (TRAPS), not provided, Familial hibernian fever (FHF) [MIM:142680] 6,333,823(-) G/A/T