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TNFRSF1A Gene(Protein Coding)

TNF Receptor Superfamily Member 1A

GCID:
GC12M006308
GIFtS:
60
Genes Participants
UDN Logo

Aliases for TNFRSF1A Gene

Aliases for TNFRSF1A Gene

  • TNF Receptor Superfamily Member 1A 2 3 5
  • TNF-R1 3 4
  • TNF-RI 3 4
  • TNFR-I 3 4
  • TNFR1 3 4
  • TNFAR 3 4
  • P60 3 4
  • P55 3 4
  • Tumor Necrosis Factor Receptor Superfamily, Member 1A 2
  • Tumor Necrosis Factor Receptor Superfamily Member 1A 3
  • Tumor Necrosis Factor Receptor 1A Isoform Beta 3
  • Tumor Necrosis Factor Binding Protein 1 3
  • Tumor Necrosis Factor Receptor Type 1 3
  • Tumor Necrosis Factor Receptor Type I 4
  • Tumor Necrosis Factor-Alpha Receptor 3
  • Tumor Necrosis Factor Receptor 1 4
  • CD120a Antigen 4
  • TNF-R-I 3
  • TNF-R55 3
  • CD120a 3
  • TNFR55 3
  • TNFR60 3
  • TNF-R 3
  • P55-R 3
  • Tbp1 3
  • FPF 3

External Ids for TNFRSF1A Gene

Previous HGNC Symbols for TNFRSF1A Gene

  • TNFR1

Previous GeneCards Identifiers for TNFRSF1A Gene

  • GC12M006292
  • GC12M006412

Summaries for TNFRSF1A Gene

Entrez Gene Summary for TNFRSF1A Gene

  • This gene encodes a member of the TNF receptor superfamily of proteins. The encoded receptor is found in membrane-bound and soluble forms that interact with membrane-bound and soluble forms, respectively, of its ligand, tumor necrosis factor alpha. Binding of membrane-bound tumor necrosis factor alpha to the membrane-bound receptor induces receptor trimerization and activation, which plays a role in cell survival, apoptosis, and inflammation. Proteolytic processing of the encoded receptor results in release of the soluble form of the receptor, which can interact with free tumor necrosis factor alpha to inhibit inflammation. Mutations in this gene underlie tumor necrosis factor receptor-associated periodic syndrome (TRAPS), characterized by fever, abdominal pain and other features. Mutations in this gene may also be associated with multiple sclerosis in human patients. [provided by RefSeq, Sep 2016]

GeneCards Summary for TNFRSF1A Gene

TNFRSF1A (TNF Receptor Superfamily Member 1A) is a Protein Coding gene. Diseases associated with TNFRSF1A include Periodic Fever, Familial, Autosomal Dominant and Multiple Sclerosis 5. Among its related pathways are PEDF Induced Signaling and Apoptosis Modulation and Signaling. Gene Ontology (GO) annotations related to this gene include protein complex binding and tumor necrosis factor-activated receptor activity. An important paralog of this gene is TNFRSF25.

UniProtKB/Swiss-Prot for TNFRSF1A Gene

  • Receptor for TNFSF2/TNF-alpha and homotrimeric TNFSF1/lymphotoxin-alpha. The adapter molecule FADD recruits caspase-8 to the activated receptor. The resulting death-inducing signaling complex (DISC) performs caspase-8 proteolytic activation which initiates the subsequent cascade of caspases (aspartate-specific cysteine proteases) mediating apoptosis. Contributes to the induction of non-cytocidal TNF effects including anti-viral state and activation of the acid sphingomyelinase.

Gene Wiki entry for TNFRSF1A Gene

Additional gene information for TNFRSF1A Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNFRSF1A Gene

Genomics for TNFRSF1A Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for TNFRSF1A Gene

Promoters and enhancers for TNFRSF1A Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12I006331 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 560.6 +4.0 3979 12.7 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 SP3 ZC3H11A TNFRSF1A ZNF384 ENSG00000219410 NOP2 ENSG00000247853 CHD4 SCARNA12 NCAPD2 SPSB2 ENSG00000256967
GH12I006940 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -611.5 -611541 25.9 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 PTPN6 C12orf57 ZNF384 ENSG00000219410 CHD4 ENSG00000247853 SPSB2 SCARNA12 ENSG00000256967 NCAPD2
GH12I006762 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -424.3 -424287 7.2 ZFP64 FEZF1 YY1 E2F8 ZNF143 SP3 NFYC MEF2D ZNF610 GLIS1 MLF2 PTMS ENSG00000219410 ZNF384 CHD4 NCAPD2 EMG1 ENSG00000247853 PTPN6 SPSB2
GH12I006849 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -510.3 -510331 5.4 HDGF PKNOX1 FOXA2 SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 CDCA3 USP5 SPSB2 ZNF384 NOP2 ENSG00000247853 CHD4 ENSG00000219410 SCARNA12 ENSG00000256967
GH12I006382 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 12.2 -42.0 -41981 3.1 CLOCK MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B ZNF143 LTBR TNFRSF1A PLEKHG6 TAPBPL CD27-AS1 IFFO1 LOC105369628 SCNN1A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TNFRSF1A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TNFRSF1A gene promoter:

Genomic Locations for TNFRSF1A Gene

Genomic Locations for TNFRSF1A Gene
chr12:6,328,757-6,342,117
(GRCh38/hg38)
Size:
13,361 bases
Orientation:
Minus strand
chr12:6,437,923-6,451,283
(GRCh37/hg19)

Genomic View for TNFRSF1A Gene

Genes around TNFRSF1A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNFRSF1A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNFRSF1A Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TNFRSF1A Gene

Proteins for TNFRSF1A Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for TNFRSF1A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P19438-TNR1A_HUMAN
    Recommended name:
    Tumor necrosis factor receptor superfamily member 1A
    Protein Accession:
    P19438
    Secondary Accessions:
    • A8K4X3
    • B2RDE4
    • B3KPQ1
    • B4DQB7
    • B4E309
    • B5M0B5
    • D3DUR1
    • Q9UCA4

    Protein attributes for TNFRSF1A Gene

    Size:
    455 amino acids
    Molecular mass:
    50495 Da
    Quaternary structure:
    • Binding of TNF to the extracellular domain leads to homotrimerization. The aggregated death domains provide a novel molecular interface that interacts specifically with the death domain of TRADD. Various TRADD-interacting proteins such as TRAFS, RIPK1 and possibly FADD, are recruited to the complex by their association with TRADD. This complex activates at least two distinct signaling cascades, apoptosis and NF-kappa-B signaling. Interacts with BAG4, BABAM2, FEM1B, GRB2, SQSTM1 and TRPC4AP. Interacts directly with NOL3 (via CARD domain); inhibits TNF-signaling pathway (By similarity).
    • (Microbial infection) Interacts with mumps virus protein SH; this interaction inhibits downstream NF-kappa-B pathway activation (PubMed:28659487). Interacts with HCV core protein. Interacts with human cytomegalovirus/HHV-5 protein UL138 (PubMed:21976655).

    Three dimensional structures from OCA and Proteopedia for TNFRSF1A Gene

    Alternative splice isoforms for TNFRSF1A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TNFRSF1A Gene

Protein Expression for TNFRSF1A Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for TNFRSF1A Gene

  • The soluble form is produced from the membrane form by proteolytic processing.
  • Glycosylation at posLast=5454, isoforms=2, 4, 5145, and posLast=151151
  • Modification sites at PhosphoSitePlus

Other Protein References for TNFRSF1A Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for TNFRSF1A (TNF RI/TNFRSF1A)

No data available for DME Specific Peptides for TNFRSF1A Gene

Domains & Families for TNFRSF1A Gene

Gene Families for TNFRSF1A Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Candidate cardiovascular disease genes
  • CD markers
  • Disease related genes
  • Plasma proteins
  • Predicted membrane proteins
  • Predicted secreted proteins

Protein Domains for TNFRSF1A Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TNFRSF1A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P19438

UniProtKB/Swiss-Prot:

TNR1A_HUMAN :
  • The domain that induces A-SMASE is probably identical to the death domain. The N-SMASE activation domain (NSD) is both necessary and sufficient for activation of N-SMASE.
Domain:
  • The domain that induces A-SMASE is probably identical to the death domain. The N-SMASE activation domain (NSD) is both necessary and sufficient for activation of N-SMASE.
  • Both the cytoplasmic membrane-proximal region and the C-terminal region containing the death domain are involved in the interaction with TRPC4AP.
genes like me logo Genes that share domains with TNFRSF1A: view

Function for TNFRSF1A Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for TNFRSF1A Gene

GENATLAS Biochemistry:
tumor necrosis factor receptor superfamily,member 1A,involved at least in two independent pathways,acidic sphingomyelinase controlling expression of multiple TNF-responsive genes,including the apoptotic pathway,neutral sphingomyelinase critical for the inflammatory and proliferative responses induced by TNF
UniProtKB/Swiss-Prot Function:
Receptor for TNFSF2/TNF-alpha and homotrimeric TNFSF1/lymphotoxin-alpha. The adapter molecule FADD recruits caspase-8 to the activated receptor. The resulting death-inducing signaling complex (DISC) performs caspase-8 proteolytic activation which initiates the subsequent cascade of caspases (aspartate-specific cysteine proteases) mediating apoptosis. Contributes to the induction of non-cytocidal TNF effects including anti-viral state and activation of the acid sphingomyelinase.

Phenotypes From GWAS Catalog for TNFRSF1A Gene

Gene Ontology (GO) - Molecular Function for TNFRSF1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005031 tumor necrosis factor-activated receptor activity IEA,TAS 2158863
GO:0005515 protein binding IPI 1087798
GO:0043120 tumor necrosis factor binding IBA --
genes like me logo Genes that share ontologies with TNFRSF1A: view
genes like me logo Genes that share phenotypes with TNFRSF1A: view

Human Phenotype Ontology for TNFRSF1A Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for TNFRSF1A Gene

MGI Knock Outs for TNFRSF1A:

Animal Model Products

miRNA for TNFRSF1A Gene

miRTarBase miRNAs that target TNFRSF1A

Clone Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for TNFRSF1A Gene

Localization for TNFRSF1A Gene

Subcellular locations from UniProtKB/Swiss-Prot for TNFRSF1A Gene

Cell membrane; Single-pass type I membrane protein. Golgi apparatus membrane; Single-pass type I membrane protein. Secreted. Note=A secreted form is produced through proteolytic processing.
Isoform 4: Secreted. Note=Lacks a Golgi-retention motif, is not membrane bound and therefore is secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TNFRSF1A gene
Compartment Confidence
plasma membrane 5
extracellular 5
mitochondrion 5
golgi apparatus 5
cytosol 3
nucleus 2
endoplasmic reticulum 2
endosome 2
cytoskeleton 1
lysosome 1

Gene Ontology (GO) - Cellular Components for TNFRSF1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IDA 22801493
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IDA 13130484
GO:0005739 mitochondrion IBA --
GO:0005794 Golgi apparatus IEA --
genes like me logo Genes that share ontologies with TNFRSF1A: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for TNFRSF1A Gene

Pathways & Interactions for TNFRSF1A Gene

genes like me logo Genes that share pathways with TNFRSF1A: view

SIGNOR curated interactions for TNFRSF1A Gene

Activates:
Inactivates:
Is activated by:
Is inactivated by:

Gene Ontology (GO) - Biological Process for TNFRSF1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006693 prostaglandin metabolic process IEA --
GO:0006915 apoptotic process IEA --
GO:0006952 defense response IEA --
GO:0006954 inflammatory response IEA,ISS --
GO:0006955 immune response IBA --
genes like me logo Genes that share ontologies with TNFRSF1A: view

Drugs & Compounds for TNFRSF1A Gene

Products:

  1. Drug

(67) Drugs for TNFRSF1A Gene - From: DrugBank, PharmGKB, DGIdb, IUPHAR, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Etanercept Approved, Investigational Pharma 413
Infliximab Approved Pharma 407
Adalimumab Approved Pharma 521
6-[3-(4-Morpholinyl)Propyl]-2-(3-Nitrophenyl)-5-Thioxo-5,6,-Dihydro-7h-Thienol[2',3':4,5]Pyrrolo[1,2-C]Imidazol-7-One Experimental Pharma Target 0
tumour necrosis factor membrane form Pharma 0

(49) Additional Compounds for TNFRSF1A Gene - From: Novoseek and IUPHAR

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
lymphotoxin-alpha
genes like me logo Genes that share compounds with TNFRSF1A: view

Transcripts for TNFRSF1A Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TNFRSF1A Gene

(3) REFSEQ mRNAs :
(12) Additional mRNA sequences :
(368) Selected AceView cDNA sequences:
(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TNFRSF1A Gene

Tumor necrosis factor receptor superfamily, member 1A:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TNFRSF1A Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^
SP1: - - - - -
SP2: - - - - - - -
SP3: - - - - - - - -
SP4: - -
SP5: - - - -
SP6: - - - - - - - - - -
SP7: - -
SP8: - - -
SP9: - - - - - - - - - -
SP10:
SP11: -
SP12:

ExUns: 12 ^ 13 ^ 14
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

Relevant External Links for TNFRSF1A Gene

GeneLoc Exon Structure for
TNFRSF1A
ECgene alternative splicing isoforms for
TNFRSF1A

Expression for TNFRSF1A Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNFRSF1A Gene

mRNA expression in normal human tissues for TNFRSF1A Gene
mRNA expression by GTEx for TNFRSF1A GenemRNA expression by BioGPS for TNFRSF1A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TNFRSF1A Gene

This gene is overexpressed in Whole Blood (x6.3).

Protein differential expression in normal tissues from HIPED for TNFRSF1A Gene

This gene is overexpressed in Pancreatic juice (51.7), Platelet (9.7), and Fetal heart (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TNFRSF1A Gene



Protein tissue co-expression partners for TNFRSF1A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TNFRSF1A Gene:

TNFRSF1A

SOURCE GeneReport for Unigene cluster for TNFRSF1A Gene:

Hs.279594

Evidence on tissue expression from TISSUES for TNFRSF1A Gene

  • Blood(4.9)
  • Nervous system(4.9)
  • Muscle(4.5)
  • Lung(4.4)
  • Intestine(4.3)
  • Urine(4.2)
  • Spleen(4.1)
  • Kidney(4)
  • Skin(3.8)
  • Liver(3.4)
  • Heart(2.9)
  • Lymph node(2.9)
  • Bone marrow(2.8)
  • Stomach(2.1)

Phenotype-based relationships between genes and organs from Gene ORGANizer for TNFRSF1A Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • digestive
  • immune
  • integumentary
  • lymphatic
  • nervous
  • reproductive
  • respiratory
  • skeletal muscle
  • skeleton
  • urinary
Regions:
Head and neck:
  • brain
  • ear
  • eye
  • head
Thorax:
  • chest wall
  • esophagus
  • heart
  • heart valve
Abdomen:
  • intestine
  • kidney
  • large intestine
  • liver
  • small intestine
  • stomach
Pelvis:
  • rectum
  • testicle
Limb:
  • ankle
  • digit
  • elbow
  • finger
  • foot
  • hand
  • hip
  • knee
  • lower limb
  • shoulder
  • toe
  • upper limb
  • wrist
General:
  • blood
  • blood vessel
  • lymph node
  • lymph vessel
  • peripheral nerve
  • peripheral nervous system
  • red blood cell
  • skin
  • white blood cell
genes like me logo Genes that share expression patterns with TNFRSF1A: view

No data available for mRNA Expression by UniProt/SwissProt for TNFRSF1A Gene

Orthologs for TNFRSF1A Gene

This gene was present in the common ancestor of chordates.

Orthologs for TNFRSF1A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia TNFRSF1A 33 34
  • 98.67 (n)
dog
(Canis familiaris)
 Mammalia TNFRSF1A 33 34
  • 82.39 (n)
cow
(Bos Taurus)
 Mammalia TNFRSF1A 33 34
  • 76.88 (n)
rat
(Rattus norvegicus)
 Mammalia Tnfrsf1a 33
  • 75.15 (n)
mouse
(Mus musculus)
 Mammalia Tnfrsf1a 33 16 34
  • 73.24 (n)
oppossum
(Monodelphis domestica)
 Mammalia TNFRSF1A 34
  • 42 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia TNFRSF1A 34
  • 38 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves TNFRSF1A 33 34
  • 50.61 (n)
lizard
(Anolis carolinensis)
 Reptilia TNFRSF1A 34
  • 31 (a)
 OneToOne