Aliases for TNFRSF14-AS1 Gene

Subcategory (RNA class) for TNFRSF14-AS1 Gene

ncRNA

Quality Score for this RNA gene is

16

Aliases for TNFRSF14-AS1 Gene

  • TNFRSF14 Antisense RNA 1 2 3 5
  • TNFRSF14-AS1 2 170
  • ENST00000416860.2 3
  • NONHSAG000163 94
  • HSALNG0000276 169
  • HSALNG0000277 169

External Ids for TNFRSF14-AS1 Gene

Additional External Ids for TNFRSF14-AS1 Gene

Summaries for TNFRSF14-AS1 Gene

GeneCards Summary for TNFRSF14-AS1 Gene

TNFRSF14-AS1 (TNFRSF14 Antisense RNA 1) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with TNFRSF14-AS1 include Acute Myocardial Infarction.

Additional gene information for TNFRSF14-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TNFRSF14-AS1 Gene

Genomics for TNFRSF14-AS1 Gene

GeneHancer (GH) Regulatory Elements for TNFRSF14-AS1 Gene

Promoters and enhancers for TNFRSF14-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J002555 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.3 291 5.1 SP1 ZBTB6 MLX RBPJ USF2 NR2F6 FOS MYC CC2D1A ETV6 TNFRSF14 TNFRSF14-AS1 MMEL1 PRXL2B lnc-TNFRSF14-1
GH01J002559 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.6 -5.7 -5660 6.2 CTCF L3MBTL2 ZFX CBFA2T2 EGR1 IKZF1 GLIS2 ZIC2 PRDM10 ZNF24 MMEL1 PRXL2B TNFRSF14-AS1 ENSG00000225931 LOC100996583 TNFRSF14
GH01J002568 Enhancer 0.3 Ensembl 5.4 -11.9 -11869 0.6 HDGF lnc-MMEL1-1 piR-39767-002 lnc-TNFRSF14-3 TNFRSF14-AS1 ENSG00000225931 LOC100996583
GH01J002543 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.9 9850 8.8 GTF3C2 ZNF24 SP1 ZBTB40 CTCF ZBTB6 FOXA1 MLX RBPJ SMARCE1 ENSG00000269737 CDK11A RER1 SLC35E2A ENSG00000227775 TNFRSF14 FAAP20 MORN1 MMEL1 ENSG00000231630
GH01J002552 Promoter/Enhancer 0.6 Ensembl dbSUPER 0.6 +4.1 4131 0.2 HDGF piR-39767-001 lnc-TNFRSF14-1 TNFRSF14 TNFRSF14-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TNFRSF14-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TNFRSF14-AS1 Gene

Genomic Locations for TNFRSF14-AS1 Gene
chr1:2,549,919-2,557,032
(GRCh38/hg38)
Size:
7,114 bases
Orientation:
Minus strand
chr1:2,481,359-2,484,284
(GRCh37/hg19)
Size:
2,926 bases
Orientation:
Minus strand

Genomic View for TNFRSF14-AS1 Gene

Genes around TNFRSF14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNFRSF14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNFRSF14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNFRSF14-AS1 Gene

Proteins for TNFRSF14-AS1 Gene

Post-translational modifications for TNFRSF14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNFRSF14-AS1 Gene

Domains & Families for TNFRSF14-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TNFRSF14-AS1 Gene

Function for TNFRSF14-AS1 Gene

Phenotypes From GWAS Catalog for TNFRSF14-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNFRSF14-AS1 Gene

Localization for TNFRSF14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNFRSF14-AS1 Gene

Pathways & Interactions for TNFRSF14-AS1 Gene

PathCards logo

SuperPathways for TNFRSF14-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TNFRSF14-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNFRSF14-AS1 Gene

Drugs & Compounds for TNFRSF14-AS1 Gene

No Compound Related Data Available

Transcripts for TNFRSF14-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TNFRSF14-AS1 Gene

No ASD Table

Relevant External Links for TNFRSF14-AS1 Gene

GeneLoc Exon Structure for
TNFRSF14-AS1
ECgene alternative splicing isoforms for
TNFRSF14-AS1

Expression for TNFRSF14-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNFRSF14-AS1 Gene

Orthologs for TNFRSF14-AS1 Gene

Evolution for TNFRSF14-AS1 Gene

ENSEMBL:
Gene Tree for TNFRSF14-AS1 (if available)
TreeFam:
Gene Tree for TNFRSF14-AS1 (if available)

No data available for Orthologs for TNFRSF14-AS1 Gene

Paralogs for TNFRSF14-AS1 Gene

No data available for Paralogs for TNFRSF14-AS1 Gene

Variants for TNFRSF14-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNFRSF14-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs4870 not-provided, not specified 2,556,714(-) A/G intron_variant
rs1000197950 -- 2,550,892(-) C/T intron_variant
rs1000369065 -- 2,558,100(-) G/A upstream_transcript_variant
rs1000816958 -- 2,551,080(-) C/T non_coding_transcript_variant
rs1000874025 -- 2,555,022(-) G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TNFRSF14-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1n47 OTHER inversion 21111241
dgv1n50 OTHER inversion 21212237
esv1699286 OTHER inversion 17803354
esv2471749 OTHER inversion 19546169
esv3447351 OTHER inversion 20981092
nsv1 OTHER inversion 15895083
nsv436691 OTHER inversion 17901297
nsv470684 CNV loss 18288195
nsv545077 CNV gain 21841781
nsv545080 CNV loss 21841781
nsv545082 CNV loss 21841781
nsv7171 OTHER inversion 18451855
nsv818222 CNV loss 17921354
nsv823920 CNV gain 20364138
nsv824031 CNV gain 20364138
nsv951557 CNV deletion 24416366

Additional Variant Information for TNFRSF14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNFRSF14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TNFRSF14-AS1 Gene

Disorders for TNFRSF14-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TNFRSF14-AS1 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
acute myocardial infarction
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TNFRSF14-AS1

genes like me logo Genes that share disorders with TNFRSF14-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TNFRSF14-AS1 Gene

Publications for TNFRSF14-AS1 Gene

  1. Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients. (PMID: 28418905) Zhai H … Yang YN (Oncotarget 2017) 2 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for TNFRSF14-AS1 Gene

Sources for TNFRSF14-AS1 Gene