Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TNFRSF10A-AS1 Gene

Subcategory (RNA class) for TNFRSF10A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TNFRSF10A-AS1 Gene

  • TNFRSF10A Antisense RNA 1 2 3 5
  • RP11-1149O23.2 3

External Ids for TNFRSF10A-AS1 Gene

Summaries for TNFRSF10A-AS1 Gene

GeneCards Summary for TNFRSF10A-AS1 Gene

TNFRSF10A-AS1 (TNFRSF10A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with TNFRSF10A-AS1 include Gastric Cancer.

Additional gene information for TNFRSF10A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNFRSF10A-AS1 Gene

Genomics for TNFRSF10A-AS1 Gene

GeneHancer (GH) Regulatory Elements for TNFRSF10A-AS1 Gene

Promoters and enhancers for TNFRSF10A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J023188 Enhancer 0.3 Ensembl 600.7 -1.2 -1178 0.2 POLR2A TNFRSF10A-AS1 TNFRSF10D
GH08J023180 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -7.6 -7615 2.8 ZNF652 ELF3 CEBPG SP1 PPARG HNF1A ZNF384 KAT8 IKZF1 RXRA ENSG00000246582 TNFRSF10A ENSG00000250714 CHMP7 R3HCC1 ENTPD4 TNFRSF10D TNFRSF10A-AS1
GH08J023174 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 -12.8 -12787 3.9 ZKSCAN8 MLLT1 IKZF1 GLIS2 IKZF2 ZIC2 SP1 JUND FOXA2 FOS ENSG00000246582 CHMP7 TNFRSF10A ENSG00000250714 R3HCC1 TNFRSF10C TNFRSF10D TNFRSF10B TNFRSF10A-AS1
GH08J023171 Enhancer 1 Ensembl ENCODE 0.4 -17.5 -17495 0.8 CBFA2T2 NKRF MLLT1 ZNF687 IKZF1 BACH1 IKZF2 ZNF143 LARP7 TRIM22 CHMP7 R3HCC1 TNFRSF10D TNFRSF10A-AS1
GH08J023201 Enhancer 0.2 Ensembl 0.4 +13.6 13622 3.4 TNFRSF10A ENSG00000246582 CHMP7 ENSG00000250714 R3HCC1 LOXL2 RPL23AP55 TNFRSF10A-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TNFRSF10A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TNFRSF10A-AS1 Gene

Genomic Locations for TNFRSF10A-AS1 Gene
chr8:23,189,279-23,190,675
(GRCh38/hg38)
Size:
1,397 bases
Orientation:
Plus strand
chr8:23,046,792-23,048,188
(GRCh37/hg19)
Size:
1,397 bases
Orientation:
Plus strand

Genomic View for TNFRSF10A-AS1 Gene

Genes around TNFRSF10A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNFRSF10A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNFRSF10A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TNFRSF10A-AS1 Gene

Proteins for TNFRSF10A-AS1 Gene

Post-translational modifications for TNFRSF10A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNFRSF10A-AS1 Gene

Domains & Families for TNFRSF10A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNFRSF10A-AS1 Gene

Function for TNFRSF10A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNFRSF10A-AS1 Gene

Localization for TNFRSF10A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNFRSF10A-AS1 Gene

Pathways & Interactions for TNFRSF10A-AS1 Gene

PathCards logo

SuperPathways for TNFRSF10A-AS1 Gene

No Data Available

Interacting Proteins for TNFRSF10A-AS1 Gene

Gene Ontology (GO) - Biological Process for TNFRSF10A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNFRSF10A-AS1 Gene

Drugs & Compounds for TNFRSF10A-AS1 Gene

No Compound Related Data Available

Transcripts for TNFRSF10A-AS1 Gene

mRNA/cDNA for TNFRSF10A-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TNFRSF10A-AS1 Gene

No ASD Table

Relevant External Links for TNFRSF10A-AS1 Gene

GeneLoc Exon Structure for
TNFRSF10A-AS1
ECgene alternative splicing isoforms for
TNFRSF10A-AS1

Expression for TNFRSF10A-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNFRSF10A-AS1 Gene

Orthologs for TNFRSF10A-AS1 Gene

Evolution for TNFRSF10A-AS1 Gene

ENSEMBL:
Gene Tree for TNFRSF10A-AS1 (if available)
TreeFam:
Gene Tree for TNFRSF10A-AS1 (if available)

No data available for Orthologs for TNFRSF10A-AS1 Gene

Paralogs for TNFRSF10A-AS1 Gene

No data available for Paralogs for TNFRSF10A-AS1 Gene

Variants for TNFRSF10A-AS1 Gene

Additional Variant Information for TNFRSF10A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNFRSF10A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNFRSF10A-AS1 Gene

Disorders for TNFRSF10A-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TNFRSF10A-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with TNFRSF10A-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for TNFRSF10A-AS1 Gene

Publications for TNFRSF10A-AS1 Gene

  1. A Tumor-Specific Prognostic Long Non-Coding RNA Signature in Gastric Cancer. (PMID: 27727196) Ren W … Ying X (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 58
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 58

Products for TNFRSF10A-AS1 Gene

Sources for TNFRSF10A-AS1 Gene

Content
Loading form....