Aliases for TNFRSF10A-AS1 Gene

Subcategory (RNA class) for TNFRSF10A-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TNFRSF10A-AS1 Gene

  • TNFRSF10A Antisense RNA 1 2 3 5
  • TNFRSF10A-AS1 2 5 165
  • RP11-1149O23.2 2 3
  • NONHSAG049752.2 91
  • HSALNG0063964 164

External Ids for TNFRSF10A-AS1 Gene

Summaries for TNFRSF10A-AS1 Gene

GeneCards Summary for TNFRSF10A-AS1 Gene

TNFRSF10A-AS1 (TNFRSF10A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TNFRSF10A-AS1 include Gastric Cancer.

Additional gene information for TNFRSF10A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TNFRSF10A-AS1 Gene

Genomics for TNFRSF10A-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TNFRSF10A-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TNFRSF10A-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TNFRSF10A-AS1 Gene

Genomic Locations for TNFRSF10A-AS1 Gene
chr8:23,189,278-23,190,675
(GRCh38/hg38)
Size:
1,398 bases
Orientation:
Plus strand
chr8:23,046,792-23,048,188
(GRCh37/hg19)
Size:
1,397 bases
Orientation:
Plus strand

Genomic View for TNFRSF10A-AS1 Gene

Genes around TNFRSF10A-AS1 on UCSC Golden Path with GeneCards custom track
TNFRSF10A-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TNFRSF10A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNFRSF10A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TNFRSF10A-AS1 Gene

Proteins for TNFRSF10A-AS1 Gene

Post-translational modifications for TNFRSF10A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNFRSF10A-AS1 Gene

Domains & Families for TNFRSF10A-AS1 Gene

Gene Families for TNFRSF10A-AS1 Gene

genes like me logo Genes that share domains with TNFRSF10A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TNFRSF10A-AS1 Gene

Function for TNFRSF10A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNFRSF10A-AS1 Gene

Localization for TNFRSF10A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNFRSF10A-AS1 Gene

Pathways & Interactions for TNFRSF10A-AS1 Gene

PathCards logo

SuperPathways for TNFRSF10A-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TNFRSF10A-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TNFRSF10A-AS1 Gene

Drugs & Compounds for TNFRSF10A-AS1 Gene

No Compound Related Data Available

Transcripts for TNFRSF10A-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TNFRSF10A-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000101F1E_9606 lncRNA 637 4

HGNC: 53164,

Ensembl: ENST00000518308 (view in UCSC) ,

LNCipedia: TNFRSF10A-AS1:3,

NONCODE: NONHSAT125542.2,

URS0000EB95CB_9606 lncRNA 639 1

LncBook: HSALNT0289411,

TNFRSF10A-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TNFRSF10A-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TNFRSF10A-AS1 Gene

No ASD Table

Relevant External Links for TNFRSF10A-AS1 Gene

GeneLoc Exon Structure for
TNFRSF10A-AS1

Expression for TNFRSF10A-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNFRSF10A-AS1 Gene

Orthologs for TNFRSF10A-AS1 Gene

Evolution for TNFRSF10A-AS1 Gene

ENSEMBL:
Gene Tree for TNFRSF10A-AS1 (if available)
TreeFam:
Gene Tree for TNFRSF10A-AS1 (if available)

No data available for Orthologs for TNFRSF10A-AS1 Gene

Paralogs for TNFRSF10A-AS1 Gene

No data available for Paralogs for TNFRSF10A-AS1 Gene

Variants for TNFRSF10A-AS1 Gene

Additional Variant Information for TNFRSF10A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNFRSF10A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNFRSF10A-AS1 Gene

Disorders for TNFRSF10A-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TNFRSF10A-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TNFRSF10A-AS1

genes like me logo Genes that share disorders with TNFRSF10A-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TNFRSF10A-AS1 Gene

Publications for TNFRSF10A-AS1 Gene

  1. A Tumor-Specific Prognostic Long Non-Coding RNA Signature in Gastric Cancer. (PMID: 27727196) Ren W … Ying X (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3

Products for TNFRSF10A-AS1 Gene

Sources for TNFRSF10A-AS1 Gene