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Aliases for TNFAIP8L2-SCNM1 Gene

Aliases for TNFAIP8L2-SCNM1 Gene

  • TNFAIP8L2-SCNM1 Readthrough 3

External Ids for TNFAIP8L2-SCNM1 Gene

Previous GeneCards Identifiers for TNFAIP8L2-SCNM1 Gene

  • GC01U903158

Summaries for TNFAIP8L2-SCNM1 Gene

Entrez Gene Summary for TNFAIP8L2-SCNM1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring TNFAIP8L2 (tumor necrosis factor, alpha-induced protein 8-like 2) and SCNM1 (sodium channel modifier 1) genes on chromosome 1. The protein-coding read-through transcript variant encodes a protein that shares sequence identity with the downstream gene product but its N-terminal region is shorter due to alternate exon use relative to the downstream gene. [provided by RefSeq, Dec 2016]

GeneCards Summary for TNFAIP8L2-SCNM1 Gene

TNFAIP8L2-SCNM1 (TNFAIP8L2-SCNM1 Readthrough) is a Protein Coding gene.

Additional gene information for TNFAIP8L2-SCNM1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNFAIP8L2-SCNM1 Gene

Genomics for TNFAIP8L2-SCNM1 Gene

GeneHancer (GH) Regulatory Elements for TNFAIP8L2-SCNM1 Gene

Promoters and enhancers for TNFAIP8L2-SCNM1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I151156 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 550.8 +2.0 1953 4.9 HDGF ARID4B RAD21 ZBTB40 RFX5 ZNF366 ZNF143 ZNF207 ETV6 IKZF2 SCNM1 TNFAIP8L2 TNFAIP8L2-SCNM1 SEMA6C BNIPL LYSMD1
GH01I151164 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 +9.4 9420 3.1 CLOCK DMAP1 IRF4 YY1 E2F8 ZNF143 SP3 NFYC MEF2D ZNF610 LYSMD1 SCNM1 PRPF3 SETDB1 PI4KB ARNT UBE2D3P3 ZNF687 PIP5K1A CTSK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TNFAIP8L2-SCNM1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TNFAIP8L2-SCNM1 Gene

Genomic Locations for TNFAIP8L2-SCNM1 Gene
chr1:151,156,629-151,170,297
(GRCh38/hg38)
Size:
13,669 bases
Orientation:
Plus strand
chr1:151,129,105-151,142,773
(GRCh37/hg19)

Genomic View for TNFAIP8L2-SCNM1 Gene

Genes around TNFAIP8L2-SCNM1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNFAIP8L2-SCNM1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNFAIP8L2-SCNM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNFAIP8L2-SCNM1 Gene

Proteins for TNFAIP8L2-SCNM1 Gene

Post-translational modifications for TNFAIP8L2-SCNM1 Gene

No Post-translational modifications

Other Protein References for TNFAIP8L2-SCNM1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for TNFAIP8L2-SCNM1 Gene

Domains & Families for TNFAIP8L2-SCNM1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNFAIP8L2-SCNM1 Gene

Function for TNFAIP8L2-SCNM1 Gene

Phenotypes for TNFAIP8L2-SCNM1 Gene

genes like me logo Genes that share phenotypes with TNFAIP8L2-SCNM1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNFAIP8L2-SCNM1 Gene

Localization for TNFAIP8L2-SCNM1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNFAIP8L2-SCNM1 Gene

Pathways & Interactions for TNFAIP8L2-SCNM1 Gene

SuperPathways for TNFAIP8L2-SCNM1 Gene

No Data Available

Interacting Proteins for TNFAIP8L2-SCNM1 Gene

Gene Ontology (GO) - Biological Process for TNFAIP8L2-SCNM1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNFAIP8L2-SCNM1 Gene

Drugs & Compounds for TNFAIP8L2-SCNM1 Gene

No Compound Related Data Available

Transcripts for TNFAIP8L2-SCNM1 Gene

mRNA/cDNA for TNFAIP8L2-SCNM1 Gene

(1) REFSEQ mRNAs :

Alternative Splicing Database (ASD) splice patterns (SP) for TNFAIP8L2-SCNM1 Gene

No ASD Table

Relevant External Links for TNFAIP8L2-SCNM1 Gene

GeneLoc Exon Structure for
TNFAIP8L2-SCNM1

Expression for TNFAIP8L2-SCNM1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNFAIP8L2-SCNM1 Gene

genes like me logo Genes that share expression patterns with TNFAIP8L2-SCNM1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNFAIP8L2-SCNM1 Gene

Orthologs for TNFAIP8L2-SCNM1 Gene

No data available for Orthologs and Evolution for TNFAIP8L2-SCNM1 Gene

Paralogs for TNFAIP8L2-SCNM1 Gene

No data available for Paralogs for TNFAIP8L2-SCNM1 Gene

Variants for TNFAIP8L2-SCNM1 Gene

Sequence variations from dbSNP and Humsavar for TNFAIP8L2-SCNM1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000605489 -- 151,158,487(+) A/T intron_variant
rs1000901120 -- 151,164,922(+) T/G intron_variant
rs1001309604 -- 151,164,080(+) G/C intron_variant
rs1001354526 -- 151,168,461(+) T/G intron_variant
rs1001465731 -- 151,170,622(+) G/A/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TNFAIP8L2-SCNM1 Gene

Variant ID Type Subtype PubMed ID
nsv522840 CNV gain 19592680
esv3587520 CNV loss 21293372
dgv2n68 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for TNFAIP8L2-SCNM1 Gene

Disorders for TNFAIP8L2-SCNM1 Gene

Additional Disease Information for TNFAIP8L2-SCNM1

No disorders were found for TNFAIP8L2-SCNM1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNFAIP8L2-SCNM1 Gene

Publications for TNFAIP8L2-SCNM1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58

Products for TNFAIP8L2-SCNM1 Gene

Sources for TNFAIP8L2-SCNM1 Gene

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