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Aliases for TMSB4XP4 Gene

Subcategory (RNA class) for TMSB4XP4 Gene

lncRNA

Aliases for TMSB4XP4 Gene

  • Thymosin Beta 4, X-Linked Pseudogene 4 2 3 5
  • Thymosin-Like 4 (Pseudogene) 2 3
  • Thymosin-Like 4 2
  • TMSL4 3

External Ids for TMSB4XP4 Gene

ORGUL Members for TMSB4XP4 Gene

Previous HGNC Symbols for TMSB4XP4 Gene

  • TMSL4

Previous GeneCards Identifiers for TMSB4XP4 Gene

  • GC09P131105
  • GC09P131106

Summaries for TMSB4XP4 Gene

GeneCards Summary for TMSB4XP4 Gene

TMSB4XP4 (Thymosin Beta 4, X-Linked Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for TMSB4XP4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMSB4XP4 Gene

Genomics for TMSB4XP4 Gene

GeneHancer (GH) Regulatory Elements for TMSB4XP4 Gene

Promoters and enhancers for TMSB4XP4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I128339 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -1.5 -1494 2.1 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B SLC27A4 TRR-TCT3-1 TMSB4XP4 ZNF79 NUP188 NAIF1 SNORA65 GLE1 CIZ1 RPL12
GH09I128342 Promoter 0.7 EPDnew 550.8 0.0 -14 0.1 SCRT2 CREB1 ZNF311 TRR-TCT3-1 SLC27A4 TMSB4XP4 DOLK
GH09I128438 Enhancer 1.1 Ensembl ENCODE 11.3 +96.8 96767 0.8 HDGF ELF3 RB1 NFIB ARID4B SIN3A ZNF2 ZNF48 RAD21 ARID2 ENSG00000273186 SLC27A4 TMSB4XP4 LOC101929270 SPTAN1 RNU7-171P PKN3 LOC100506100 ZDHHC12 GC09P128443
GH09I128254 Enhancer 0.8 ENCODE 11.6 -86.9 -86891 1.3 HNRNPUL1 CTCF BACH1 MCM2 RAD21 RELA ZNF335 CC2D1A ZFHX2 POLR2A PIR60763 PIR59608 PIR35126 PIR31217 GC09P128282 GC09P128281 GC09P128280 GC09P128277 GC09P128269 GC09P128262
GH09I128375 Enhancer 0.4 dbSUPER 12.2 +33.8 33838 0.5 MAFF ZNF316 MAFK URM1 CERCAM TMSB4XP4 SLC27A4 ENSG00000272593
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMSB4XP4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMSB4XP4 Gene

Genomic Locations for TMSB4XP4 Gene
chr9:128,342,153-128,342,774
(GRCh38/hg38)
Size:
622 bases
Orientation:
Plus strand
chr9:131,104,432-131,105,049
(GRCh37/hg19)

Genomic View for TMSB4XP4 Gene

Genes around TMSB4XP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMSB4XP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMSB4XP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMSB4XP4 Gene

Proteins for TMSB4XP4 Gene

Post-translational modifications for TMSB4XP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMSB4XP4 Gene

Domains & Families for TMSB4XP4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMSB4XP4 Gene

Function for TMSB4XP4 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMSB4XP4 Gene

Localization for TMSB4XP4 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMSB4XP4 gene
Compartment Confidence
cytosol 3
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMSB4XP4 Gene

Pathways & Interactions for TMSB4XP4 Gene

SuperPathways for TMSB4XP4 Gene

No Data Available

Interacting Proteins for TMSB4XP4 Gene

Gene Ontology (GO) - Biological Process for TMSB4XP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMSB4XP4 Gene

Drugs & Compounds for TMSB4XP4 Gene

No Compound Related Data Available

Transcripts for TMSB4XP4 Gene

mRNA/cDNA for TMSB4XP4 Gene

(20) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMSB4XP4 Gene

No ASD Table

Relevant External Links for TMSB4XP4 Gene

GeneLoc Exon Structure for
TMSB4XP4
ECgene alternative splicing isoforms for
TMSB4XP4

Expression for TMSB4XP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMSB4XP4 Gene

mRNA differential expression in normal tissues according to GTEx for TMSB4XP4 Gene

This gene is overexpressed in Whole Blood (x4.2).

Protein differential expression in normal tissues from HIPED for TMSB4XP4 Gene

This gene is overexpressed in Urine (58.4) and Skin (10.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for TMSB4XP4 Gene



Protein tissue co-expression partners for TMSB4XP4 Gene

NURSA nuclear receptor signaling pathways regulating expression of TMSB4XP4 Gene:

TMSB4XP4

Evidence on tissue expression from TISSUES for TMSB4XP4 Gene

  • Stomach(3.7)
  • Intestine(3.3)
  • Nervous system(3.2)
  • Heart(3.1)
  • Kidney(3.1)
  • Liver(3)
  • Muscle(2.8)
genes like me logo Genes that share expression patterns with TMSB4XP4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMSB4XP4 Gene

Orthologs for TMSB4XP4 Gene

Evolution for TMSB4XP4 Gene

ENSEMBL:
Gene Tree for TMSB4XP4 (if available)
TreeFam:
Gene Tree for TMSB4XP4 (if available)

No data available for Orthologs for TMSB4XP4 Gene

Paralogs for TMSB4XP4 Gene

(5) SIMAP similar genes for TMSB4XP4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TMSB4XP4: view

No data available for Paralogs for TMSB4XP4 Gene

Variants for TMSB4XP4 Gene

Additional Variant Information for TMSB4XP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMSB4XP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMSB4XP4 Gene

Disorders for TMSB4XP4 Gene

No disorders were found for TMSB4XP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TMSB4XP4 Gene

Publications for TMSB4XP4 Gene

No publications were found for TMSB4XP4 Gene.

Products for TMSB4XP4 Gene

Sources for TMSB4XP4 Gene

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