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Aliases for TMSB15B-AS1 Gene

Subcategory (RNA class) for TMSB15B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TMSB15B-AS1 Gene

  • TMSB15B Antisense RNA 1 2 3
  • AC234782.2 5

External Ids for TMSB15B-AS1 Gene

Summaries for TMSB15B-AS1 Gene

GeneCards Summary for TMSB15B-AS1 Gene

TMSB15B-AS1 (TMSB15B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMSB15B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMSB15B-AS1 Gene

Genomics for TMSB15B-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMSB15B-AS1 Gene

Promoters and enhancers for TMSB15B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ103917 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 650.7 +0.9 932 2.8 PKNOX1 SIN3A ZNF335 GLIS2 SCRT2 BCLAF1 EGR2 SMARCA5 ZNF654 SP3 RAB9B TMSB15B TMSB15B-AS1 H2BFM ENSG00000235946 SLC25A53 FAM199X
GH0XJ103920 Enhancer 0.3 Ensembl 650.7 -0.9 -876 0.2 ZFX TMSB15B-AS1 TMSB15B LOC644261
GH0XJ104317 Enhancer 0.8 Ensembl ENCODE 3.9 -398.6 -398620 2.1 ELF3 ZNF3 PKNOX1 CEBPB ETV5 GABPA NFIL3 SP1 JUND POLR2A SLC25A53 TMSB15B-AS1 GC0XM104365 ESX1
GH0XJ104324 Enhancer 0.4 ENCODE 4 -405.0 -404956 2 PRDM1 TRIM28 TMSB15B-AS1 GC0XM104365 ESX1
GH0XJ104329 Enhancer 0.3 ENCODE 4 -410.6 -410646 2.5 CEBPB TMSB15B-AS1 GC0XM104365 ESX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMSB15B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMSB15B-AS1 Gene

Genomic Locations for TMSB15B-AS1 Gene
chrX:103,916,984-103,920,025
(GRCh38/hg38)
Size:
3,042 bases
Orientation:
Minus strand
chrX:103,172,005-103,174,131
(GRCh37/hg19)
Size:
2,127 bases
Orientation:
Minus strand

Genomic View for TMSB15B-AS1 Gene

Genes around TMSB15B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMSB15B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMSB15B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMSB15B-AS1 Gene

Proteins for TMSB15B-AS1 Gene

Post-translational modifications for TMSB15B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMSB15B-AS1 Gene

Domains & Families for TMSB15B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMSB15B-AS1 Gene

Function for TMSB15B-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMSB15B-AS1 Gene

Localization for TMSB15B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMSB15B-AS1 Gene

Pathways & Interactions for TMSB15B-AS1 Gene

SuperPathways for TMSB15B-AS1 Gene

No Data Available

Interacting Proteins for TMSB15B-AS1 Gene

Gene Ontology (GO) - Biological Process for TMSB15B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMSB15B-AS1 Gene

Drugs & Compounds for TMSB15B-AS1 Gene

No Compound Related Data Available

Transcripts for TMSB15B-AS1 Gene

mRNA/cDNA for TMSB15B-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMSB15B-AS1 Gene

No ASD Table

Relevant External Links for TMSB15B-AS1 Gene

GeneLoc Exon Structure for
TMSB15B-AS1
ECgene alternative splicing isoforms for
TMSB15B-AS1

Expression for TMSB15B-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMSB15B-AS1 Gene

Orthologs for TMSB15B-AS1 Gene

Evolution for TMSB15B-AS1 Gene

ENSEMBL:
Gene Tree for TMSB15B-AS1 (if available)
TreeFam:
Gene Tree for TMSB15B-AS1 (if available)

No data available for Orthologs for TMSB15B-AS1 Gene

Paralogs for TMSB15B-AS1 Gene

No data available for Paralogs for TMSB15B-AS1 Gene

Variants for TMSB15B-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMSB15B-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1008559233 -- 103,917,759(-) G/A non_coding_transcript_variant
rs1009006901 -- 103,917,092(-) G/A downstream_transcript_variant
rs1024386530 -- 103,918,031(-) T/C non_coding_transcript_variant
rs1027742681 -- 103,917,364(-) A/T downstream_transcript_variant
rs1027881848 -- 103,917,908(-) T/C non_coding_transcript_variant

Additional Variant Information for TMSB15B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMSB15B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMSB15B-AS1 Gene

Disorders for TMSB15B-AS1 Gene

No disorders were found for TMSB15B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TMSB15B-AS1 Gene

Publications for TMSB15B-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy KW … Pang CP (Physiological genomics 2006) 3 58

Products for TMSB15B-AS1 Gene

Sources for TMSB15B-AS1 Gene

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