Aliases for TMEM9B-AS1 Gene

Subcategory (RNA class) for TMEM9B-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TMEM9B-AS1 Gene

  • TMEM9B Antisense RNA 1 2 3 5
  • TMEM9B-AS1 2 5 165
  • TMEM9B Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 11 Open Reading Frame 18 2
  • NONHSAG007602.2 91
  • HSALNG0082585 164
  • C11orf18 3

External Ids for TMEM9B-AS1 Gene

Previous HGNC Symbols for TMEM9B-AS1 Gene

  • C11orf18

Previous GeneCards Identifiers for TMEM9B-AS1 Gene

  • GC11P008987

Summaries for TMEM9B-AS1 Gene

GeneCards Summary for TMEM9B-AS1 Gene

TMEM9B-AS1 (TMEM9B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TMEM9B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMEM9B-AS1 Gene

Genomics for TMEM9B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TMEM9B-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM9B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TMEM9B-AS1 Gene

Genomic Locations for TMEM9B-AS1 Gene
chr11:8,964,444-8,978,919
(GRCh38/hg38)
Size:
14,476 bases
Orientation:
Plus strand
chr11:8,986,222-8,999,074
(GRCh37/hg19)
Size:
12,853 bases
Orientation:
Plus strand

Genomic View for TMEM9B-AS1 Gene

Genes around TMEM9B-AS1 on UCSC Golden Path with GeneCards custom track
TMEM9B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TMEM9B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM9B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM9B-AS1 Gene

Proteins for TMEM9B-AS1 Gene

Post-translational modifications for TMEM9B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM9B-AS1 Gene

Domains & Families for TMEM9B-AS1 Gene

Gene Families for TMEM9B-AS1 Gene

genes like me logo Genes that share domains with TMEM9B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMEM9B-AS1 Gene

Function for TMEM9B-AS1 Gene

Phenotypes From GWAS Catalog for TMEM9B-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM9B-AS1 Gene

Localization for TMEM9B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM9B-AS1 Gene

Pathways & Interactions for TMEM9B-AS1 Gene

PathCards logo

SuperPathways for TMEM9B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMEM9B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TMEM9B-AS1 Gene

Drugs & Compounds for TMEM9B-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM9B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TMEM9B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003F075B_9606 lncRNA 1053 6

HGNC: 19230,

RefSeq: NR_073431,

Ensembl: ENST00000525484 (view in UCSC) ,

LncBook: HSALNT0171820,

LNCipedia: TMEM9B-AS1:2,

NONCODE: NONHSAT017896.2,

URS000045B46F_9606 lncRNA 615 4

Ensembl: ENST00000532599 (view in UCSC) ,

LncBook: HSALNT0171824,

LNCipedia: TMEM9B-AS1:3,

NONCODE: NONHSAT017897.2,

URS0000580668_9606 lncRNA 383 4

Ensembl: ENST00000534349 (view in UCSC) ,

LncBook: HSALNT0171825, HSALNT0171826,

LNCipedia: TMEM9B-AS1:4,

NONCODE: NONHSAT017898.2,

URS0000EF26BC_9606 lncRNA 4181 1

Ensembl: ENST00000657967 (view in UCSC) ,

URS00008C2018_9606 lncRNA 13721 2

LNCipedia: TMEM9B-AS1:1,

NONCODE: NONHSAT017895.2,

TMEM9B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TMEM9B-AS1 Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM9B-AS1 Gene

No ASD Table

Relevant External Links for TMEM9B-AS1 Gene

GeneLoc Exon Structure for
TMEM9B-AS1

Expression for TMEM9B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM9B-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM9B-AS1 Gene:

Hs.591981
genes like me logo Genes that share expression patterns with TMEM9B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM9B-AS1 Gene

Orthologs for TMEM9B-AS1 Gene

Evolution for TMEM9B-AS1 Gene

ENSEMBL:
Gene Tree for TMEM9B-AS1 (if available)
TreeFam:
Gene Tree for TMEM9B-AS1 (if available)

No data available for Orthologs for TMEM9B-AS1 Gene

Paralogs for TMEM9B-AS1 Gene

No data available for Paralogs for TMEM9B-AS1 Gene

Variants for TMEM9B-AS1 Gene

Additional dbSNP identifiers (rs#s) for TMEM9B-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TMEM9B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759803 CNV gain 17122850
esv3891928 CNV gain 25118596
nsv435923 CNV deletion 17901297
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855
nsv832062 CNV loss 17160897

Additional Variant Information for TMEM9B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM9B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TMEM9B-AS1 Gene

Disorders for TMEM9B-AS1 Gene

Additional Disease Information for TMEM9B-AS1

No disorders were found for TMEM9B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM9B-AS1 Gene

Publications for TMEM9B-AS1 Gene

  1. Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7. (PMID: 11528127) Amid C … Schmidt ER (Cytogenetics and cell genetics 2001) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3
  4. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3

Products for TMEM9B-AS1 Gene

Sources for TMEM9B-AS1 Gene