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Aliases for TMEM9B-AS1 Gene

Subcategory (RNA class) for TMEM9B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TMEM9B-AS1 Gene

  • TMEM9B Antisense RNA 1 2 3 5
  • TMEM9B Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 11 Open Reading Frame 18 2
  • C11orf18 3

External Ids for TMEM9B-AS1 Gene

Previous HGNC Symbols for TMEM9B-AS1 Gene

  • C11orf18

Previous GeneCards Identifiers for TMEM9B-AS1 Gene

  • GC11P008987

Summaries for TMEM9B-AS1 Gene

GeneCards Summary for TMEM9B-AS1 Gene

TMEM9B-AS1 (TMEM9B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMEM9B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM9B-AS1 Gene

Genomics for TMEM9B-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMEM9B-AS1 Gene

Promoters and enhancers for TMEM9B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J008962 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 682.1 -0.3 -313 3.9 SP1 ZFX ELF3 MNT CBFA2T2 NKRF POLR2A ZNF121 GTF2F1 ZNF687 TMEM9B-AS1 TMEM9B SNORA3B WEE1 EIF3F RPL27A ENSG00000254397 ENSG00000239470 AKIP1 ENSG00000238387
GH11J008863 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 41.1 -96.9 -96932 10.7 CEBPG ZBTB7A SP7 PRDM1 ZNF384 GLIS2 POLR2A ZNF600 LEF1 PRDM10 ST5 TMEM9B-AS1 AKIP1 SCUBE2 TRIM66 C11orf16 ENSG00000202276 GC11M008877 RNA5SP330
GH11J007985 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 25 -977.0 -977046 3.5 ZFX SP1 CC2D1A CTCF ELF3 SIX5 CBFA2T2 NKRF CEBPG GTF2F1 EIF3F OLFML1 SNORA3B TMEM9B-AS1 RPL27A ST5 CASC23 TUB ENSG00000254921 ZNF214
GH11J008806 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 23.3 -153.4 -153434 10.1 ZFX CTCF ZNF148 ZNF121 ZNF384 ZNF644 RAD21 KAT8 POLR2A RXRA ST5 TMEM9B-AS1 AKIP1 SCUBE2 ENSG00000255159 ENSG00000254665 RPL27A TRIM66 ENSG00000254900 TMEM9B
GH11J008932 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 43.6 -31.5 -31474 1.6 RFX1 CTCF CUX1 C11orf16 TMEM9B-AS1 AKIP1 ASCL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM9B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM9B-AS1 Gene

Genomic Locations for TMEM9B-AS1 Gene
chr11:8,964,675-8,977,527
(GRCh38/hg38)
Size:
12,853 bases
Orientation:
Plus strand
chr11:8,986,222-8,999,074
(GRCh37/hg19)
Size:
12,853 bases
Orientation:
Plus strand

Genomic View for TMEM9B-AS1 Gene

Genes around TMEM9B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM9B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM9B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM9B-AS1 Gene

Proteins for TMEM9B-AS1 Gene

Post-translational modifications for TMEM9B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM9B-AS1 Gene

Domains & Families for TMEM9B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM9B-AS1 Gene

Function for TMEM9B-AS1 Gene

Phenotypes From GWAS Catalog for TMEM9B-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM9B-AS1 Gene

Localization for TMEM9B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM9B-AS1 Gene

Pathways & Interactions for TMEM9B-AS1 Gene

PathCards logo

SuperPathways for TMEM9B-AS1 Gene

No Data Available

Interacting Proteins for TMEM9B-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM9B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM9B-AS1 Gene

Drugs & Compounds for TMEM9B-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM9B-AS1 Gene

mRNA/cDNA for TMEM9B-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Unigene Clusters for TMEM9B-AS1 Gene

TMEM9B antisense RNA 1:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM9B-AS1 Gene

No ASD Table

Relevant External Links for TMEM9B-AS1 Gene

GeneLoc Exon Structure for
TMEM9B-AS1
ECgene alternative splicing isoforms for
TMEM9B-AS1

Expression for TMEM9B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM9B-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM9B-AS1 Gene:

Hs.591981
genes like me logo Genes that share expression patterns with TMEM9B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM9B-AS1 Gene

Orthologs for TMEM9B-AS1 Gene

Evolution for TMEM9B-AS1 Gene

ENSEMBL:
Gene Tree for TMEM9B-AS1 (if available)
TreeFam:
Gene Tree for TMEM9B-AS1 (if available)

No data available for Orthologs for TMEM9B-AS1 Gene

Paralogs for TMEM9B-AS1 Gene

No data available for Paralogs for TMEM9B-AS1 Gene

Variants for TMEM9B-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM9B-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000045416 -- 8,965,599(+) C/T intron_variant
rs1000232781 -- 8,966,880(+) T/C intron_variant
rs1000263921 -- 8,966,573(+) C/G non_coding_transcript_variant
rs1000522809 -- 8,974,036(+) T/A intron_variant
rs1000551150 -- 8,963,083(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM9B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759803 CNV gain 17122850
esv3891928 CNV gain 25118596
nsv435923 CNV deletion 17901297
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855
nsv832062 CNV loss 17160897

Additional Variant Information for TMEM9B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM9B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM9B-AS1 Gene

Disorders for TMEM9B-AS1 Gene

Additional Disease Information for TMEM9B-AS1

No disorders were found for TMEM9B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM9B-AS1 Gene

Publications for TMEM9B-AS1 Gene

  1. Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7. (PMID: 11528127) Amid C … Schmidt ER (Cytogenetics and cell genetics 2001) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58
  4. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3 58

Products for TMEM9B-AS1 Gene

Sources for TMEM9B-AS1 Gene

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