Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TMEM9B-AS1 Gene

Subcategory (RNA class) for TMEM9B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TMEM9B-AS1 Gene

  • TMEM9B Antisense RNA 1 2 3 5
  • TMEM9B Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 11 Open Reading Frame 18 2
  • C11orf18 3

External Ids for TMEM9B-AS1 Gene

Previous HGNC Symbols for TMEM9B-AS1 Gene

  • C11orf18

Previous GeneCards Identifiers for TMEM9B-AS1 Gene

  • GC11P008987

Summaries for TMEM9B-AS1 Gene

GeneCards Summary for TMEM9B-AS1 Gene

TMEM9B-AS1 (TMEM9B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMEM9B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM9B-AS1 Gene

Genomics for TMEM9B-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMEM9B-AS1 Gene

Promoters and enhancers for TMEM9B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I008962 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 624.4 -0.3 -313 3.9 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 CBX5 TMEM9B-AS1 TMEM9B AKIP1 ENSG00000238387 ENSG00000223080
GH11I008869 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 41.1 -93.3 -93255 3.3 ZSCAN4 SIN3A ZNF76 ZNF2 RAD21 RFX5 ZNF335 GLIS2 POLR3A SCRT2 ST5 TMEM9B-AS1 AKIP1 SNORA3B ZNF143 EIF3F TRIM66 ENSG00000202276 GC11M008877 RNA5SP330
GH11I007985 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 25 -977.5 -977486 2.7 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 EIF3F SNORA3B OLFML1 TMEM9B-AS1 ZNF214 RPL27A ST5 CASC23 TUB PIR63023
GH11I008806 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 23.3 -153.4 -153434 10.1 FOXA2 ARID4B SIN3A ZNF48 ETS1 ZNF121 E2F8 ZNF143 FOS ATF7 ST5 TMEM9B-AS1 AKIP1 SCUBE2 ENSG00000255159 RPL27A ENSG00000254665 TRIM66 ENSG00000254900 TMEM9B
GH11I008905 Enhancer 0.8 ENCODE 41.3 -58.0 -58002 3.2 PKNOX1 INSM2 BRCA1 RFX5 ZNF121 ZNF366 RCOR1 ATF7 FOS CEBPB TMEM9B-AS1 AKIP1 ASCL3 ENSG00000223080 TMEM9B SCUBE2 C11orf16 ST5 GC11M008877 ENSG00000202276
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMEM9B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM9B-AS1 Gene

Genomic Locations for TMEM9B-AS1 Gene
12,853 bases
Plus strand

Genomic View for TMEM9B-AS1 Gene

Genes around TMEM9B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM9B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM9B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM9B-AS1 Gene

Proteins for TMEM9B-AS1 Gene

Post-translational modifications for TMEM9B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM9B-AS1 Gene

Domains & Families for TMEM9B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM9B-AS1 Gene

Function for TMEM9B-AS1 Gene

Phenotypes From GWAS Catalog for TMEM9B-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM9B-AS1 Gene

Localization for TMEM9B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM9B-AS1 Gene

Pathways & Interactions for TMEM9B-AS1 Gene

SuperPathways for TMEM9B-AS1 Gene

No Data Available

Interacting Proteins for TMEM9B-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM9B-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TMEM9B-AS1 Gene

Drugs & Compounds for TMEM9B-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM9B-AS1 Gene

mRNA/cDNA for TMEM9B-AS1 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM9B-AS1 Gene

TMEM9B antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM9B-AS1 Gene

No ASD Table

Relevant External Links for TMEM9B-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TMEM9B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM9B-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM9B-AS1 Gene:

genes like me logo Genes that share expression patterns with TMEM9B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM9B-AS1 Gene

Orthologs for TMEM9B-AS1 Gene

Evolution for TMEM9B-AS1 Gene

Gene Tree for TMEM9B-AS1 (if available)
Gene Tree for TMEM9B-AS1 (if available)

No data available for Orthologs for TMEM9B-AS1 Gene

Paralogs for TMEM9B-AS1 Gene

No data available for Paralogs for TMEM9B-AS1 Gene

Variants for TMEM9B-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM9B-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000045416 -- 8,965,599(+) C/T intron_variant
rs1000232781 -- 8,966,880(+) T/C intron_variant
rs1000263921 -- 8,966,573(+) C/G non_coding_transcript_variant
rs1000522809 -- 8,974,036(+) T/A intron_variant
rs1000551150 -- 8,963,083(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM9B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832062 CNV loss 17160897
nsv7215 OTHER inversion 18451855
nsv499766 OTHER inversion 21111241
nsv435923 CNV deletion 17901297
esv3891928 CNV gain 25118596
esv2759803 CNV gain 17122850

Additional Variant Information for TMEM9B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM9B-AS1 Gene

Disorders for TMEM9B-AS1 Gene

Additional Disease Information for TMEM9B-AS1

No disorders were found for TMEM9B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM9B-AS1 Gene

Publications for TMEM9B-AS1 Gene

  1. Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7. (PMID: 11528127) Amid C … Schmidt ER (Cytogenetics and cell genetics 2001) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58
  4. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3 58

Products for TMEM9B-AS1 Gene

Sources for TMEM9B-AS1 Gene

Loading form....