Aliases for TMEM92-AS1 Gene

Data sources for TMEM92-AS1 Gene:

RNA type for TMEM92-AS1 Gene

lncRNA

Aliases for TMEM92-AS1 Gene

External Ids for TMEM92-AS1 Gene

Summaries for TMEM92-AS1 Gene

GeneCards Summary for TMEM92-AS1 Gene

TMEM92-AS1 (TMEM92 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TMEM92-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMEM92-AS1 Gene

Genomics for TMEM92-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TMEM92-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM92-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TMEM92-AS1 Gene

Latest Assembly
chr17:50,281,415-50,290,010
(GRCh38/hg38)
Size:
8,596 bases
Orientation:
Minus strand

Previous Assembly
chr17:48,358,940-48,365,216
(GRCh37/hg19 by Entrez Gene)
Size:
6,277 bases
Orientation:
Minus strand

chr17:48,358,938-48,365,216
(GRCh37/hg19 by Ensembl)
Size:
6,279 bases
Orientation:
Minus strand

Genomic View for TMEM92-AS1 Gene

Genes around TMEM92-AS1 on UCSC Golden Path with GeneCards custom track
TMEM92-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TMEM92-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM92-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM92-AS1 Gene

Proteins for TMEM92-AS1 Gene

Post-translational modifications for TMEM92-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM92-AS1 Gene

Domains & Families for TMEM92-AS1 Gene

Gene Families for TMEM92-AS1 Gene

genes like me logo Genes that share domains with TMEM92-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMEM92-AS1 Gene

Function for TMEM92-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM92-AS1 Gene

Localization for TMEM92-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM92-AS1 Gene

Pathways & Interactions for TMEM92-AS1 Gene

PathCards logo

SuperPathways for TMEM92-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMEM92-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TMEM92-AS1 Gene

Drugs & Compounds for TMEM92-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM92-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TMEM92-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00001DE1B2_9606 lncRNA 754 3

Ensembl: ENST00000508851 (view in UCSC) ,

LNCipedia: TMEM92-AS1:2,

NONCODE: NONHSAT054630.2,

URS00007E4094_9606 lncRNA 752 2

RefSeq: NR_125805,

LNCipedia: TMEM92-AS1:5,

URS00008B6C4B_9606 lncRNA 2636 3

LncBook: HSALNT0242350,

LNCipedia: TMEM92-AS1:4,

NONCODE: NONHSAT054631.2,

URS00008B474F_9606 lncRNA 335 3

LncBook: HSALNT0242354,

LNCipedia: TMEM92-AS1:1,

NONCODE: NONHSAT054632.2,

URS00009C0166_9606 lncRNA 1292 2

LncBook: HSALNT0242352,

NONCODE: NONHSAT176338.1,

TMEM92-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TMEM92-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM92-AS1 Gene

No ASD Table

Relevant External Links for TMEM92-AS1 Gene

GeneLoc Exon Structure for
TMEM92-AS1

Expression for TMEM92-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM92-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TMEM92-AS1

genes like me logo Genes that share expression patterns with TMEM92-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM92-AS1 Gene

Orthologs for TMEM92-AS1 Gene

Evolution for TMEM92-AS1 Gene

ENSEMBL:
Gene Tree for TMEM92-AS1 (if available)
TreeFam:
Gene Tree for TMEM92-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for TMEM92-AS1

No data available for Orthologs for TMEM92-AS1 Gene

Paralogs for TMEM92-AS1 Gene

No data available for Paralogs for TMEM92-AS1 Gene

Variants for TMEM92-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TMEM92-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for TMEM92-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv509661 CNV insertion 20534489
nsv833475 CNV loss 17160897

Additional Variant Information for TMEM92-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM92-AS1
Leiden Open Variation Database (LOVD)
TMEM92-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TMEM92-AS1 Gene

Disorders for TMEM92-AS1 Gene

Additional Disease Information for TMEM92-AS1

No disorders were found for TMEM92-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM92-AS1 Gene

Publications for TMEM92-AS1 Gene

  1. A long noncoding RNA activated by TGF-β promotes the invasion-metastasis cascade in hepatocellular carcinoma. (PMID: 24768205) Yuan JH … Sun SH (Cancer cell 2014) 2 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for TMEM92-AS1 Gene

Sources for TMEM92-AS1 Gene