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Aliases for TMEM78 Gene

Aliases for TMEM78 Gene

  • Transmembrane Protein 78 2 3 5

External Ids for TMEM78 Gene

Previous GeneCards Identifiers for TMEM78 Gene

  • GC00U921679
  • GC01P227452
  • GC01U902162
  • GC01P229385

Summaries for TMEM78 Gene

GeneCards Summary for TMEM78 Gene

TMEM78 (Transmembrane Protein 78) is a Protein Coding gene.

Additional gene information for TMEM78 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM78 Gene

Genomics for TMEM78 Gene

GeneHancer (GH) Regulatory Elements for TMEM78 Gene

Promoters and enhancers for TMEM78 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I229250 Enhancer 0.7 Ensembl dbSUPER 550.8 +0.5 465 0.2 ZNF121 ZNF148 ZNF366 ZNF512 ZSCAN4 MAX TMEM78 LOC102723935 GC01M228906
GH01I229248 Enhancer 0.5 dbSUPER 550.8 -0.4 -363 0.8 MCM7 ZBTB6 ZNF366 ZNF512 ZBTB17 TMEM78 RAB4A LOC102723935 ENSG00000233920 GC01M228906
GH01I229251 Enhancer 0.4 dbSUPER 550.8 +1.7 1666 0.6 HLF EZH2 TMEM78 LOC102723935 GC01M228906
GH01I229267 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.8 +21.0 21016 5.4 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B ZNF766 RAB4A LOC105373159 NUP133 URB2 ENSG00000269890 HIST3H3 CCSAP TAF5L TMEM78 ABCB10
GH01I229341 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10 +93.3 93263 3.8 ARNT ARID4B SIN3A FEZF1 ZNF2 POLR2B ZNF207 ZNF143 SP3 SP5 CCSAP NUP133 HIST3H3 URB2 RNU6-180P ACTA1 TMEM78 GC01M228906
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMEM78 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM78 Gene

Genomic Locations for TMEM78 Gene
chr1:229,249,636-229,251,810
(GRCh38/hg38)
Size:
2,175 bases
Orientation:
Plus strand
chr1:229,385,383-229,387,557
(GRCh37/hg19)

Genomic View for TMEM78 Gene

Genes around TMEM78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TMEM78 Gene

Proteins for TMEM78 Gene

  • Protein details for TMEM78 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T7P6-TMM78_HUMAN
    Recommended name:
    Transmembrane protein 78
    Protein Accession:
    Q5T7P6
    Secondary Accessions:
    • Q8N802

    Protein attributes for TMEM78 Gene

    Size:
    136 amino acids
    Molecular mass:
    15193 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM78 Gene

Post-translational modifications for TMEM78 Gene

No Post-translational modifications

Other Protein References for TMEM78 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TMEM78 Gene

Domains & Families for TMEM78 Gene

Gene Families for TMEM78 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for TMEM78 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for TMEM78 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM78: view

No data available for UniProtKB/Swiss-Prot for TMEM78 Gene

Function for TMEM78 Gene

Phenotypes From GWAS Catalog for TMEM78 Gene

Phenotypes for TMEM78 Gene

GenomeRNAi human phenotypes for TMEM78:
genes like me logo Genes that share phenotypes with TMEM78: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMEM78 Gene

Localization for TMEM78 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM78 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMEM78 gene
Compartment Confidence
extracellular 3
plasma membrane 2

Gene Ontology (GO) - Cellular Components for TMEM78 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM78: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for TMEM78 Gene

Pathways & Interactions for TMEM78 Gene

SuperPathways for TMEM78 Gene

No Data Available

Interacting Proteins for TMEM78 Gene

Gene Ontology (GO) - Biological Process for TMEM78 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM78 Gene

Drugs & Compounds for TMEM78 Gene

No Compound Related Data Available

Transcripts for TMEM78 Gene

mRNA/cDNA for TMEM78 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM78 Gene

Transmembrane protein 78:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM78 Gene

No ASD Table

Relevant External Links for TMEM78 Gene

GeneLoc Exon Structure for
TMEM78
ECgene alternative splicing isoforms for
TMEM78

Expression for TMEM78 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM78 Gene

mRNA differential expression in normal tissues according to GTEx for TMEM78 Gene

This gene is overexpressed in Testis (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of TMEM78 Gene:

TMEM78

SOURCE GeneReport for Unigene cluster for TMEM78 Gene:

Hs.638407
genes like me logo Genes that share expression patterns with TMEM78: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM78 Gene

Orthologs for TMEM78 Gene

Evolution for TMEM78 Gene

ENSEMBL:
Gene Tree for TMEM78 (if available)
TreeFam:
Gene Tree for TMEM78 (if available)

No data available for Orthologs for TMEM78 Gene

Paralogs for TMEM78 Gene

(10) SIMAP similar genes for TMEM78 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TMEM78: view

No data available for Paralogs for TMEM78 Gene

Variants for TMEM78 Gene

Variation tolerance for TMEM78 Gene

Gene Damage Index Score: 6.68; 78.52% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TMEM78 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TMEM78 Gene

Disorders for TMEM78 Gene

Additional Disease Information for TMEM78

No disorders were found for TMEM78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM78 Gene

Publications for TMEM78 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58

Products for TMEM78 Gene

Sources for TMEM78 Gene

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