Aliases for TMEM72-AS1 Gene

Subcategory (RNA class) for TMEM72-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for TMEM72-AS1 Gene

  • TMEM72 Antisense RNA 1 2 3 5
  • TMEM72-AS1 2 5 165
  • TMEM72 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG005751.2 91
  • NONHSAG005754.2 91
  • HSALNG0077635 164

External Ids for TMEM72-AS1 Gene

Previous GeneCards Identifiers for TMEM72-AS1 Gene

  • GC10M045308

Summaries for TMEM72-AS1 Gene

GeneCards Summary for TMEM72-AS1 Gene

TMEM72-AS1 (TMEM72 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TMEM72-AS1 include Familial Atrial Fibrillation.

Additional gene information for TMEM72-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMEM72-AS1 Gene

Genomics for TMEM72-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TMEM72-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM72-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TMEM72-AS1 Gene

Genomic Locations for TMEM72-AS1 Gene
chr10:44,793,119-44,959,709
(GRCh38/hg38)
Size:
166,591 bases
Orientation:
Minus strand
chr10:45,306,472-45,455,137
(GRCh37/hg19)
Size:
148,666 bases
Orientation:
Minus strand

Genomic View for TMEM72-AS1 Gene

Genes around TMEM72-AS1 on UCSC Golden Path with GeneCards custom track
TMEM72-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TMEM72-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM72-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM72-AS1 Gene

Proteins for TMEM72-AS1 Gene

Post-translational modifications for TMEM72-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM72-AS1 Gene

Domains & Families for TMEM72-AS1 Gene

Gene Families for TMEM72-AS1 Gene

genes like me logo Genes that share domains with TMEM72-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMEM72-AS1 Gene

Function for TMEM72-AS1 Gene

Phenotypes From GWAS Catalog for TMEM72-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM72-AS1 Gene

Localization for TMEM72-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM72-AS1 Gene

Pathways & Interactions for TMEM72-AS1 Gene

PathCards logo

SuperPathways for TMEM72-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMEM72-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TMEM72-AS1 Gene

Drugs & Compounds for TMEM72-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM72-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TMEM72-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000952F1_9606 lncRNA 3300 5

HGNC: 27349,

RefSeq: NR_033842,

Ensembl: ENST00000450287 (view in UCSC) ,

LNCipedia: TMEM72-AS1:2,

NONCODE: NONHSAT013041.2,

URS0000EEF6B9_9606 lncRNA 4391 1

Ensembl: ENST00000659078 (view in UCSC) ,

URS0000EEF709_9606 lncRNA 3889 1

Ensembl: ENST00000668942 (view in UCSC) ,

URS0000EED9F4_9606 lncRNA 3815 1

Ensembl: ENST00000669460 (view in UCSC) ,

URS0000EF4E7A_9606 lncRNA 3416 1

Ensembl: ENST00000659046 (view in UCSC) ,

TMEM72-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TMEM72-AS1 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM72-AS1 Gene

No ASD Table

Relevant External Links for TMEM72-AS1 Gene

GeneLoc Exon Structure for
TMEM72-AS1

Expression for TMEM72-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM72-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TMEM72-AS1

SOURCE GeneReport for Unigene cluster for TMEM72-AS1 Gene:

Hs.568801
genes like me logo Genes that share expression patterns with TMEM72-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM72-AS1 Gene

Orthologs for TMEM72-AS1 Gene

Evolution for TMEM72-AS1 Gene

ENSEMBL:
Gene Tree for TMEM72-AS1 (if available)
TreeFam:
Gene Tree for TMEM72-AS1 (if available)

No data available for Orthologs for TMEM72-AS1 Gene

Paralogs for TMEM72-AS1 Gene

No data available for Paralogs for TMEM72-AS1 Gene

Variants for TMEM72-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TMEM72-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
rs587777896 Not Provided: not provided 44,934,719(-) C/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for TMEM72-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TMEM72-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1104n54 CNV gain 21841781
dgv1105n54 CNV gain 21841781
dgv210e212 CNV gain 25503493
dgv21e55 CNV gain 17911159
dgv438n106 CNV deletion 24896259
dgv729n100 CNV gain 25217958
dgv80n27 CNV gain 19166990
esv2666500 CNV deletion 23128226
esv2678805 CNV deletion 23128226
esv27175 CNV loss 19812545
esv2736072 CNV deletion 23290073
esv2736083 CNV deletion 23290073
esv2736094 CNV deletion 23290073
esv2736105 CNV deletion 23290073
esv2760155 CNV gain 21179565
esv2762860 CNV loss 21179565
esv32821 CNV gain+loss 17666407
esv3546235 CNV deletion 23714750
esv3576560 CNV gain 25503493
esv3623068 CNV gain 21293372
esv3623072 CNV gain 21293372
esv3623073 CNV loss 21293372
esv3623074 CNV loss 21293372
esv3623075 CNV loss 21293372
esv3623076 CNV gain 21293372
nsv1035235 CNV loss 25217958
nsv1068307 CNV deletion 25765185
nsv1110671 CNV insertion 24896259
nsv1120219 CNV tandem duplication 24896259
nsv1153452 CNV deletion 26484159
nsv24641 CNV insertion 16902084
nsv466909 CNV gain 19166990
nsv470933 CNV gain 18288195
nsv474623 CNV novel sequence insertion 20440878
nsv517161 CNV gain+loss 19592680
nsv550714 CNV gain 21841781
nsv6521 CNV insertion 18451855
nsv818757 CNV loss 17921354
nsv831844 CNV gain 17160897
nsv831845 CNV gain 17160897
nsv831846 CNV loss 17160897

Additional Variant Information for TMEM72-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM72-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM72-AS1 Gene

Disorders for TMEM72-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TMEM72-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
familial atrial fibrillation
  • atrial fibrillation, familial, 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TMEM72-AS1

genes like me logo Genes that share disorders with TMEM72-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TMEM72-AS1 Gene

Publications for TMEM72-AS1 Gene

  1. Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema. (PMID: 20709820) Kong X … ECLIPSE Study NETT Investigators (American journal of respiratory and critical care medicine 2011) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for TMEM72-AS1 Gene

Sources for TMEM72-AS1 Gene