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Aliases for TMEM51-AS1 Gene

Subcategory (RNA class) for TMEM51-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TMEM51-AS1 Gene

  • TMEM51 Antisense RNA 1 2 3 5
  • Chromosome 1 Open Reading Frame 126 2
  • C1orf126 3

External Ids for TMEM51-AS1 Gene

Previous HGNC Symbols for TMEM51-AS1 Gene

  • C1orf126

Previous GeneCards Identifiers for TMEM51-AS1 Gene

  • GC01M015439

Summaries for TMEM51-AS1 Gene

GeneCards Summary for TMEM51-AS1 Gene

TMEM51-AS1 (TMEM51 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with TMEM51-AS1 include Chromophobe Renal Cell Carcinoma and Hepatocellular Carcinoma.

Additional gene information for TMEM51-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM51-AS1 Gene

Genomics for TMEM51-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMEM51-AS1 Gene

Promoters and enhancers for TMEM51-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM51-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM51-AS1 Gene

Genomic Locations for TMEM51-AS1 Gene
chr1:15,111,815-15,153,237
(GRCh38/hg38)
Size:
41,423 bases
Orientation:
Minus strand
chr1:15,438,311-15,478,960
(GRCh37/hg19)
Size:
40,650 bases
Orientation:
Minus strand

Genomic View for TMEM51-AS1 Gene

Genes around TMEM51-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM51-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM51-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM51-AS1 Gene

Proteins for TMEM51-AS1 Gene

Post-translational modifications for TMEM51-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM51-AS1 Gene

Domains & Families for TMEM51-AS1 Gene

Suggested Antigen Peptide Sequences for TMEM51-AS1 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ42440 fis, clone BLADE2008281 (B3KW75_HUMAN)

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TMEM51-AS1 Gene

Function for TMEM51-AS1 Gene

Phenotypes From GWAS Catalog for TMEM51-AS1 Gene

genes like me logo Genes that share phenotypes with TMEM51-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TMEM51-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM51-AS1 Gene

Localization for TMEM51-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM51-AS1 Gene

Pathways & Interactions for TMEM51-AS1 Gene

PathCards logo

SuperPathways for TMEM51-AS1 Gene

No Data Available

Interacting Proteins for TMEM51-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM51-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM51-AS1 Gene

Drugs & Compounds for TMEM51-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM51-AS1 Gene

mRNA/cDNA for TMEM51-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(22) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for TMEM51-AS1 Gene

TMEM51 antisense RNA 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TMEM51-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM51-AS1 Gene

No ASD Table

Relevant External Links for TMEM51-AS1 Gene

GeneLoc Exon Structure for
TMEM51-AS1
ECgene alternative splicing isoforms for
TMEM51-AS1

Expression for TMEM51-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM51-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMEM51-AS1 Gene

This gene is overexpressed in Spleen (x6.5), Brain - Cerebellum (x4.3), and Brain - Cerebellar Hemisphere (x4.2).

SOURCE GeneReport for Unigene cluster for TMEM51-AS1 Gene:

Hs.531424
genes like me logo Genes that share expression patterns with TMEM51-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM51-AS1 Gene

Orthologs for TMEM51-AS1 Gene

Evolution for TMEM51-AS1 Gene

ENSEMBL:
Gene Tree for TMEM51-AS1 (if available)
TreeFam:
Gene Tree for TMEM51-AS1 (if available)

No data available for Orthologs for TMEM51-AS1 Gene

Paralogs for TMEM51-AS1 Gene

No data available for Paralogs for TMEM51-AS1 Gene

Variants for TMEM51-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM51-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000014348 -- 15,134,755(-) G/A intron_variant
rs1000015178 -- 15,131,365(-) T/C intron_variant
rs1000123349 -- 15,129,562(-) G/A/C intron_variant
rs1000168199 -- 15,126,498(-) C/T intron_variant
rs1000183493 -- 15,149,763(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM51-AS1 Gene

Variant ID Type Subtype PubMed ID
esv22618 CNV loss 19812545
nsv508913 CNV insertion 20534489
nsv545591 CNV loss 21841781
nsv833425 CNV gain 17160897

Additional Variant Information for TMEM51-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM51-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM51-AS1 Gene

Disorders for TMEM51-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for TMEM51-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
chromophobe renal cell carcinoma
  • chromophobe adenocarcinoma
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TMEM51-AS1

genes like me logo Genes that share disorders with TMEM51-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TMEM51-AS1 Gene

Publications for TMEM51-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TMEM51-AS1 Gene

Sources for TMEM51-AS1 Gene

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