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Aliases for TMEM254-AS1 Gene

Subcategory (RNA class) for TMEM254-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TMEM254-AS1 Gene

  • TMEM254 Antisense RNA 1 2 3 5

External Ids for TMEM254-AS1 Gene

Previous GeneCards Identifiers for TMEM254-AS1 Gene

  • GC10M081807

Summaries for TMEM254-AS1 Gene

GeneCards Summary for TMEM254-AS1 Gene

TMEM254-AS1 (TMEM254 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMEM254-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM254-AS1 Gene

Genomics for TMEM254-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMEM254-AS1 Gene

Promoters and enhancers for TMEM254-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J080077 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 638.4 +0.2 192 2.8 ZFX ZNF148 NKRF ZNF121 ZNF384 ZNF687 ZSCAN21 AHR ZNF24 YY1 TMEM254-AS1 TMEM254 ANXA11 LINC00857
GH10J080046 Enhancer 0.9 Ensembl ENCODE 40.8 +32.1 32067 0.6 ELF3 CTCF RAD21 KAT8 ZNF143 REST ZNF692 TEAD1 SMC3 ZNF511 TMEM254-AS1 MBL1P SFTPA2 C1DP4 ENSG00000282432
GH10J080103 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 31.4 -25.9 -25889 3.5 RFX3 RFX1 MAFK TMEM254-AS1 TMEM254 SFTPD PIR41694 ENSG00000279399
GH10J080069 Enhancer 0.7 Ensembl ENCODE 36.1 +8.3 8276 2.6 PRDM1 NFIC NFIA PRDM10 POU5F1 TMEM254-AS1 MBL1P ANXA11 LINC00857 TMEM254 GC10P082813
GH10J080109 Enhancer 0.9 ENCODE dbSUPER 26.8 -31.4 -31385 1.5 HNF1A PPARG KAT8 GATAD2A RXRB IRF2 SOX13 TCF7 TEAD1 ZNF792 TMEM254-AS1 TMEM254 SFTPD PIR41694 RPL22P18
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM254-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM254-AS1 Gene

Genomic Locations for TMEM254-AS1 Gene
chr10:80,046,233-80,079,193
(GRCh38/hg38)
Size:
32,961 bases
Orientation:
Minus strand
chr10:81,805,989-81,838,949
(GRCh37/hg19)
Size:
32,961 bases
Orientation:
Minus strand

Genomic View for TMEM254-AS1 Gene

Genes around TMEM254-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM254-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM254-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM254-AS1 Gene

Proteins for TMEM254-AS1 Gene

Post-translational modifications for TMEM254-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM254-AS1 Gene

Domains & Families for TMEM254-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM254-AS1 Gene

Function for TMEM254-AS1 Gene

Phenotypes From GWAS Catalog for TMEM254-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM254-AS1 Gene

Localization for TMEM254-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM254-AS1 Gene

Pathways & Interactions for TMEM254-AS1 Gene

PathCards logo

SuperPathways for TMEM254-AS1 Gene

No Data Available

Interacting Proteins for TMEM254-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM254-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM254-AS1 Gene

Drugs & Compounds for TMEM254-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM254-AS1 Gene

mRNA/cDNA for TMEM254-AS1 Gene

(10) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNA Central transcripts :

Unigene Clusters for TMEM254-AS1 Gene

TMEM254 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM254-AS1 Gene

No ASD Table

Relevant External Links for TMEM254-AS1 Gene

GeneLoc Exon Structure for
TMEM254-AS1
ECgene alternative splicing isoforms for
TMEM254-AS1

Expression for TMEM254-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM254-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM254-AS1 Gene:

Hs.524453
genes like me logo Genes that share expression patterns with TMEM254-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM254-AS1 Gene

Orthologs for TMEM254-AS1 Gene

Evolution for TMEM254-AS1 Gene

ENSEMBL:
Gene Tree for TMEM254-AS1 (if available)
TreeFam:
Gene Tree for TMEM254-AS1 (if available)

No data available for Orthologs for TMEM254-AS1 Gene

Paralogs for TMEM254-AS1 Gene

No data available for Paralogs for TMEM254-AS1 Gene

Variants for TMEM254-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM254-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000037650 -- 80,049,593(-) C/T intron_variant
rs1000081377 -- 80,075,582(-) G/A intron_variant
rs1000128823 -- 80,053,763(-) T/C intron_variant
rs1000227629 -- 80,066,639(-) G/A intron_variant
rs1000280590 -- 80,070,269(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM254-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv941n100 CNV gain 25217958
esv275122 CNV gain+loss 21479260
esv3578987 CNV loss 25503493
esv3623933 CNV loss 21293372
esv3623934 CNV gain 21293372
esv3623935 CNV loss 21293372
esv3623936 CNV gain 21293372
esv3623938 CNV loss 21293372
esv3623939 CNV loss 21293372
nsv1141879 OTHER inversion 24896259
nsv551635 CNV loss 21841781
nsv831922 CNV loss 17160897

Additional Variant Information for TMEM254-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM254-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM254-AS1 Gene

Disorders for TMEM254-AS1 Gene

Additional Disease Information for TMEM254-AS1

No disorders were found for TMEM254-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM254-AS1 Gene

Publications for TMEM254-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for TMEM254-AS1 Gene

Sources for TMEM254-AS1 Gene

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