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Aliases for TMEM254-AS1 Gene

Subcategory (RNA class) for TMEM254-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM254-AS1 Gene

  • TMEM254 Antisense RNA 1 2 3 5

External Ids for TMEM254-AS1 Gene

Previous GeneCards Identifiers for TMEM254-AS1 Gene

  • GC10M081807

Summaries for TMEM254-AS1 Gene

GeneCards Summary for TMEM254-AS1 Gene

TMEM254-AS1 (TMEM254 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMEM254-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM254-AS1 Gene

Genomics for TMEM254-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMEM254-AS1 Gene

Promoters and enhancers for TMEM254-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I080077 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 588.5 +0.3 290 2.6 ARID4B NEUROD1 SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF143 SP3 SP5 TMEM254-AS1 TMEM254 ANXA11 LINC00857
GH10I080103 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 31.4 -25.9 -25889 3.5 RFX1 RFX3 MAFK TMEM254-AS1 TMEM254 SFTPD PIR41694 ENSG00000279399
GH10I080109 Enhancer 1.1 Ensembl ENCODE dbSUPER 26.8 -31.4 -31385 1.5 SOX13 ZNF48 TEAD3 ZNF335 GATA3 NR2F6 MIXL1 GATAD2A SOX5 NFIA TMEM254-AS1 TMEM254 SFTPD PIR41694 RPL22P18
GH10I080046 Enhancer 0.7 ENCODE 40.8 +32.1 32133 0.2 ELF3 CTCF RB1 TEAD4 ZNF2 RAD21 TEAD3 SMC3 ZNF143 ZNF654 TMEM254-AS1 SFTPA2 ENSG00000282432 C1DP4
GH10I080081 Enhancer 0.7 ENCODE 25 -3.0 -2998 1.9 SOX13 FOXA2 SAP130 CEBPG SCRT2 FOS CREM GATAD2A SOX5 ZNF3 TMEM254-AS1 TMEM254 ENSG00000279399
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMEM254-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM254-AS1 Gene

Genomic Locations for TMEM254-AS1 Gene
chr10:80,046,233-80,079,193
(GRCh38/hg38)
Size:
32,961 bases
Orientation:
Minus strand
chr10:81,805,989-81,838,949
(GRCh37/hg19)

Genomic View for TMEM254-AS1 Gene

Genes around TMEM254-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM254-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM254-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM254-AS1 Gene

Proteins for TMEM254-AS1 Gene

Post-translational modifications for TMEM254-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM254-AS1 Gene

Domains & Families for TMEM254-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM254-AS1 Gene

Function for TMEM254-AS1 Gene

Phenotypes From GWAS Catalog for TMEM254-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM254-AS1 Gene

Localization for TMEM254-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM254-AS1 Gene

Pathways & Interactions for TMEM254-AS1 Gene

SuperPathways for TMEM254-AS1 Gene

No Data Available

Interacting Proteins for TMEM254-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM254-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM254-AS1 Gene

Drugs & Compounds for TMEM254-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM254-AS1 Gene

mRNA/cDNA for TMEM254-AS1 Gene

(12) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM254-AS1 Gene

TMEM254 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM254-AS1 Gene

No ASD Table

Relevant External Links for TMEM254-AS1 Gene

GeneLoc Exon Structure for
TMEM254-AS1
ECgene alternative splicing isoforms for
TMEM254-AS1

Expression for TMEM254-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM254-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM254-AS1 Gene:

Hs.524453
genes like me logo Genes that share expression patterns with TMEM254-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM254-AS1 Gene

Orthologs for TMEM254-AS1 Gene

Evolution for TMEM254-AS1 Gene

ENSEMBL:
Gene Tree for TMEM254-AS1 (if available)
TreeFam:
Gene Tree for TMEM254-AS1 (if available)

No data available for Orthologs for TMEM254-AS1 Gene

Paralogs for TMEM254-AS1 Gene

No data available for Paralogs for TMEM254-AS1 Gene

Variants for TMEM254-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM254-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000037650 -- 80,049,593(-) C/T intron_variant
rs1000081377 -- 80,075,582(-) G/A intron_variant
rs1000128823 -- 80,053,763(-) T/C intron_variant
rs1000227629 -- 80,066,639(-) G/A intron_variant
rs1000280590 -- 80,070,269(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM254-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv831922 CNV loss 17160897
nsv551635 CNV loss 21841781
nsv1141879 OTHER inversion 24896259
esv3623939 CNV loss 21293372
esv3623938 CNV loss 21293372
esv3623936 CNV gain 21293372
esv3623935 CNV loss 21293372
esv3623934 CNV gain 21293372
esv3623933 CNV loss 21293372
esv3578987 CNV loss 25503493
esv275122 CNV gain+loss 21479260
dgv941n100 CNV gain 25217958

Additional Variant Information for TMEM254-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM254-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM254-AS1 Gene

Disorders for TMEM254-AS1 Gene

Additional Disease Information for TMEM254-AS1

No disorders were found for TMEM254-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM254-AS1 Gene

Publications for TMEM254-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for TMEM254-AS1 Gene

Sources for TMEM254-AS1 Gene

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