Aliases for TMEM252-DT Gene

Subcategory (RNA class) for TMEM252-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for TMEM252-DT Gene

  • TMEM252 Divergent Transcript 2 3 5
  • HSALNG0071692 167
  • NONHSAG052499 92
  • TMEM252-DT 2
  • Lnc-PGM5-1 168

External Ids for TMEM252-DT Gene

Summaries for TMEM252-DT Gene

GeneCards Summary for TMEM252-DT Gene

TMEM252-DT (TMEM252 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TMEM252-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMEM252-DT Gene

Genomics for TMEM252-DT Gene

GeneHancer (GH) Regulatory Elements for TMEM252-DT Gene

Promoters and enhancers for TMEM252-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J068539 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE dbSUPER 504.8 +0.1 144 2.4 ZFHX2 GLIS1 SPI1 EZH2 CTCF TMEM252-DT TMEM252 LINC01506
GH09J068514 Enhancer 1 Ensembl ENCODE dbSUPER 19.2 -25.4 -25434 2 ZNF217 FOS EP300 GATAD2B CTBP1 FOXA2 CEBPB CHD2 JUN JUND TMEM252-DT TMEM252 PRKACG ENSG00000226904 HSALNG0071689 lnc-TMEM252-4 PGM5
GH09J068505 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.4 -33.9 -33934 3.4 CTCF USF1 PHB2 TARDBP HES1 CTBP1 FOXA2 HDAC3 NR2F2 NCOR1 TMEM252 PGM5 TMEM252-DT PRKACG lnc-TMEM252-4 HSALNG0071689
GH09J068499 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.5 -40.0 -40000 3.5 ZNF217 TCF12 GATAD2B CTBP1 FOXA2 MBD2 FOS FOSL2 CEBPB NEUROD1 PGM5 TMEM252 TMEM252-DT PRKACG lnc-TMEM252-4 HSALNG0071689
GH09J069018 Enhancer 1.2 FANTOM5 Ensembl ENCODE 9.5 +479.3 479266 5 MYC CTBP1 NCOR1 NFRKB RELA MBD2 NEUROD1 ZNF316 NFIC ZKSCAN1 PRKACG PIP5K1B FAM122A TMEM252 TMEM252-DT TJP2 RF00017-7608 RF00017-7606
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM252-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM252-DT Gene

Genomic Locations for TMEM252-DT Gene
chr9:68,541,035-68,644,442
(GRCh38/hg38)
Size:
103,408 bases
Orientation:
Plus strand
chr9:71,155,952-71,259,358
(GRCh37/hg19)
Size:
103,407 bases
Orientation:
Plus strand

Genomic View for TMEM252-DT Gene

Genes around TMEM252-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM252-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM252-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM252-DT Gene

Proteins for TMEM252-DT Gene

Post-translational modifications for TMEM252-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM252-DT Gene

Domains & Families for TMEM252-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMEM252-DT Gene

Function for TMEM252-DT Gene

Phenotypes From GWAS Catalog for TMEM252-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM252-DT Gene

Localization for TMEM252-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM252-DT Gene

Pathways & Interactions for TMEM252-DT Gene

PathCards logo

SuperPathways for TMEM252-DT Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TMEM252-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TMEM252-DT Gene

Drugs & Compounds for TMEM252-DT Gene

No Compound Related Data Available

Transcripts for TMEM252-DT Gene

mRNA/cDNA for TMEM252-DT Gene

4 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM252-DT Gene

No ASD Table

Relevant External Links for TMEM252-DT Gene

GeneLoc Exon Structure for
TMEM252-DT

Expression for TMEM252-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM252-DT Gene

Orthologs for TMEM252-DT Gene

Evolution for TMEM252-DT Gene

ENSEMBL:
Gene Tree for TMEM252-DT (if available)
TreeFam:
Gene Tree for TMEM252-DT (if available)

No data available for Orthologs for TMEM252-DT Gene

Paralogs for TMEM252-DT Gene

No data available for Paralogs for TMEM252-DT Gene

Variants for TMEM252-DT Gene

Additional dbSNP identifiers (rs#s) for TMEM252-DT Gene

Additional Variant Information for TMEM252-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM252-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMEM252-DT Gene

Disorders for TMEM252-DT Gene

No disorders were found for TMEM252-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TMEM252-DT Gene

Publications for TMEM252-DT Gene

No publications were found for TMEM252-DT Gene.

No data available for Mastermind for TMEM252-DT Gene

Products for TMEM252-DT Gene

Sources for TMEM252-DT Gene