Aliases for TMEM246-AS1 Gene

Subcategory (RNA class) for TMEM246-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for TMEM246-AS1 Gene

  • TMEM246 Antisense RNA 1 2 3 5
  • TMEM246-AS1 2 170
  • HSALNG0073315 169
  • NONHSAG053058 94

External Ids for TMEM246-AS1 Gene

Summaries for TMEM246-AS1 Gene

GeneCards Summary for TMEM246-AS1 Gene

TMEM246-AS1 (TMEM246 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TMEM246-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMEM246-AS1 Gene

Genomics for TMEM246-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMEM246-AS1 Gene

Promoters and enhancers for TMEM246-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J101468 Enhancer 0.5 Ensembl ENCODE 770 +0.1 52 0.8 USF1 USF2 TMEM246-AS1 lnc-TMEM246-2
GH09J101469 Promoter/Enhancer 0.5 EPDnew Ensembl 750.6 +1.1 1141 0.2 TMEM246-AS1 RNF20 lnc-TMEM246-2
GH09J101466 Enhancer 0.3 Ensembl 750.6 -1.8 -1849 0.6 KLF4 FOS TMEM246-AS1 TMEM246 RNF20 RF00017-7776
GH09J101430 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.9 -27.0 -26961 20.9 ZNF785 CTCF LCORL FOXA1 MLX RBPJ NR2F1 NR2F6 ATF1 CREB1 ALDOB LOC105376184 ZNF189 RNF20 TMEM246 MRPL50 TMEM246-AS1 BAAT ENSG00000270982 piR-60146-194
GH09J101485 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 7 +18.6 18619 3.1 ZBTB6 POLR2A USF2 L3MBTL2 HDGF ZFX PRDM1 GMEB1 GLIS2 ZIC2 TMEM246 TMEM246-AS1 RNF20 ENSG00000233055 lnc-ALDOB-1 lnc-TMEM246-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM246-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM246-AS1 Gene

Genomic Locations for TMEM246-AS1 Gene
chr9:101,468,349-101,482,256
(GRCh38/hg38)
Size:
13,908 bases
Orientation:
Plus strand
chr9:104,230,721-104,243,784
(GRCh37/hg19)
Size:
13,064 bases
Orientation:
Plus strand

Genomic View for TMEM246-AS1 Gene

Genes around TMEM246-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM246-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM246-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM246-AS1 Gene

Proteins for TMEM246-AS1 Gene

Post-translational modifications for TMEM246-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM246-AS1 Gene

Domains & Families for TMEM246-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMEM246-AS1 Gene

Function for TMEM246-AS1 Gene

Phenotypes From GWAS Catalog for TMEM246-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM246-AS1 Gene

Localization for TMEM246-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM246-AS1 Gene

Pathways & Interactions for TMEM246-AS1 Gene

PathCards logo

SuperPathways for TMEM246-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMEM246-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM246-AS1 Gene

Drugs & Compounds for TMEM246-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM246-AS1 Gene

mRNA/cDNA for TMEM246-AS1 Gene

(4) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) NONCODE transcripts :
(14) RNACentral transcripts :
(8) LncBook transcripts :
(13) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM246-AS1 Gene

No ASD Table

Relevant External Links for TMEM246-AS1 Gene

GeneLoc Exon Structure for
TMEM246-AS1
ECgene alternative splicing isoforms for
TMEM246-AS1

Expression for TMEM246-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM246-AS1 Gene

genes like me logo Genes that share expression patterns with TMEM246-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM246-AS1 Gene

Orthologs for TMEM246-AS1 Gene

Evolution for TMEM246-AS1 Gene

ENSEMBL:
Gene Tree for TMEM246-AS1 (if available)
TreeFam:
Gene Tree for TMEM246-AS1 (if available)

No data available for Orthologs for TMEM246-AS1 Gene

Paralogs for TMEM246-AS1 Gene

No data available for Paralogs for TMEM246-AS1 Gene

Variants for TMEM246-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM246-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000131941 -- 101,472,886(+) C/T intron_variant
rs1000194219 -- 101,474,362(+) C/T intron_variant
rs1000838047 -- 101,472,538(+) T/C intron_variant
rs1000932629 -- 101,472,788(+) G/A intron_variant
rs1001278380 -- 101,470,390(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM246-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3621250 CNV gain 21293372
nsv614962 CNV gain 21841781

Additional Variant Information for TMEM246-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM246-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM246-AS1 Gene

Disorders for TMEM246-AS1 Gene

Additional Disease Information for TMEM246-AS1

No disorders were found for TMEM246-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM246-AS1 Gene

Publications for TMEM246-AS1 Gene

  1. Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci. (PMID: 25352737) Ritchie MD … McCarty CA (Molecular vision 2014) 3 56

No data available for External Links for TMEM246-AS1 Gene

Products for TMEM246-AS1 Gene

Sources for TMEM246-AS1 Gene