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Aliases for TMEM198B Gene

Aliases for TMEM198B Gene

  • Transmembrane Protein 198B (Pseudogene) 2 3 5
  • Transmembrane Protein 198, Pseudogene 2

External Ids for TMEM198B Gene

Previous GeneCards Identifiers for TMEM198B Gene

  • GC12P056235

Summaries for TMEM198B Gene

GeneCards Summary for TMEM198B Gene

TMEM198B (Transmembrane Protein 198B (Pseudogene)) is a Pseudogene.

Additional gene information for TMEM198B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM198B Gene

Genomics for TMEM198B Gene

GeneHancer (GH) Regulatory Elements for TMEM198B Gene

Promoters and enhancers for TMEM198B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I055827 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 574.5 +0.0 12 4.7 MLX FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 NFYC DNAJC14 TMEM198B GC12P055831 PIR58217 BAZ2A ENSG00000258317 ZC3H10 ENSG00000257740 PHC1P1 RN7SL809P
GH12I056220 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 62.3 +393.3 393274 5.7 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 NABP2 RNF41 NEMP1 BAZ2A PAN2 DNAJC14 ANKRD52 PHC1P1 ZBTB39 RN7SL809P
GH12I055715 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 41.9 -110.9 -110936 7.1 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 RDH5 BLOC1S1 PIR49113 PIR46127 BAZ2A DNAJC14 RN7SL809P TMEM198B PAN2 CDK2
GH12I056266 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 38.6 +437.6 437586 2 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 COQ10A GC12M056238 NEMP1 PAN2 BAZ2A PHC1P1 ANKRD52 DNAJC14 SMARCC2 RN7SL809P
GH12I056156 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 33.1 +330.3 330327 6.4 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 NFYC ZFP41 MEF2D ENSG00000257809 MYL6 NEMP1 BAZ2A DNAJC14 TMEM198B ZC3H10 RN7SL809P ENSG00000257740 SMARCC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMEM198B on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM198B Gene

Genomic Locations for TMEM198B Gene
chr12:55,829,608-55,836,246
(GRCh38/hg38)
Size:
6,639 bases
Orientation:
Plus strand
chr12:56,223,392-56,230,030
(GRCh37/hg19)

Genomic View for TMEM198B Gene

Genes around TMEM198B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM198B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM198B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM198B Gene

Proteins for TMEM198B Gene

Post-translational modifications for TMEM198B Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM198B Gene

Domains & Families for TMEM198B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM198B Gene

Function for TMEM198B Gene

Phenotypes From GWAS Catalog for TMEM198B Gene

Phenotypes for TMEM198B Gene

GenomeRNAi human phenotypes for TMEM198B:
genes like me logo Genes that share phenotypes with TMEM198B: view

Animal Model Products

  • Taconic Biosciences Mouse Models for TMEM198B

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM198B Gene

Localization for TMEM198B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM198B Gene

Pathways & Interactions for TMEM198B Gene

SuperPathways for TMEM198B Gene

No Data Available

Interacting Proteins for TMEM198B Gene

Gene Ontology (GO) - Biological Process for TMEM198B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM198B Gene

Drugs & Compounds for TMEM198B Gene

No Compound Related Data Available

Transcripts for TMEM198B Gene

Unigene Clusters for TMEM198B Gene

Transmembrane protein 198B, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM198B Gene

No ASD Table

Relevant External Links for TMEM198B Gene

GeneLoc Exon Structure for
TMEM198B
ECgene alternative splicing isoforms for
TMEM198B

Expression for TMEM198B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM198B Gene

NURSA nuclear receptor signaling pathways regulating expression of TMEM198B Gene:

TMEM198B

SOURCE GeneReport for Unigene cluster for TMEM198B Gene:

Hs.731828
genes like me logo Genes that share expression patterns with TMEM198B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM198B Gene

Orthologs for TMEM198B Gene

Evolution for TMEM198B Gene

ENSEMBL:
Gene Tree for TMEM198B (if available)
TreeFam:
Gene Tree for TMEM198B (if available)

No data available for Orthologs for TMEM198B Gene

Paralogs for TMEM198B Gene

No data available for Paralogs for TMEM198B Gene

Variants for TMEM198B Gene

Sequence variations from dbSNP and Humsavar for TMEM198B Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000205926 -- 55,833,009(+) G/A intron_variant, non_coding_transcript_variant
rs1000296454 -- 55,836,413(+) G/C downstream_transcript_variant
rs1000584101 -- 55,830,680(+) C/T non_coding_transcript_variant
rs1000872070 -- 55,829,992(+) C/G/T non_coding_transcript_variant
rs1001283510 -- 55,829,526(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM198B Gene

Variant ID Type Subtype PubMed ID
nsv1138137 CNV deletion 24896259
nsv832423 CNV gain 17160897

Additional Variant Information for TMEM198B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM198B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM198B Gene

Disorders for TMEM198B Gene

Additional Disease Information for TMEM198B

No disorders were found for TMEM198B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM198B Gene

Publications for TMEM198B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TMEM198B Gene

Sources for TMEM198B Gene

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