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Aliases for TMEM161B-AS1 Gene

Subcategory (RNA class) for TMEM161B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TMEM161B-AS1 Gene

  • TMEM161B Antisense RNA 1 2 3 5
  • TMEM161B Antisense RNA 1 (Non-Protein Coding) 2 3
  • Linc-POLR3G-8 3
  • CTC-358I24.1 3

External Ids for TMEM161B-AS1 Gene

Previous GeneCards Identifiers for TMEM161B-AS1 Gene

  • GC05P087566

Summaries for TMEM161B-AS1 Gene

GeneCards Summary for TMEM161B-AS1 Gene

TMEM161B-AS1 (TMEM161B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMEM161B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM161B-AS1 Gene

Genomics for TMEM161B-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMEM161B-AS1 Gene

Promoters and enhancers for TMEM161B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I088267 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 560.9 +0.0 42 3.1 PKNOX1 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B E2F8 TMEM161B-AS1 TMEM161B
GH05I088396 Enhancer 1.6 VISTA FANTOM5 Ensembl ENCODE dbSUPER 10.1 +128.3 128274 1.6 ZNF148 SMARCE1 KLF1 POLR2A SMARCA4 GC05P088397 TMEM161B-AS1 ENSG00000271904 MEF2C LINC02060
GH05I088256 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 10.5 -11.9 -11855 1.3 SP1 ZNF664 POU5F1 TMEM161B-AS1 GC05M088257 TMEM161B GC05P088219
GH05I088244 Enhancer 0.8 ENCODE dbSUPER 10.1 -24.0 -23950 1 SMARCE1 FOXA2 ZNF384 DPF2 SP1 ZNF217 CTBP1 GATA3 CUX1 HNF4A TMEM161B-AS1 GC05M088257 TMEM161B GC05P088219
GH05I088251 Enhancer 0.8 ENCODE 9.7 -17.6 -17633 0.1 HDAC1 CHAMP1 ATF7 ZNF362 CAVIN1 USF2 MTA1 SMARCA4 GLIS1 HMBOX1 TMEM161B-AS1 GC05M088257 TMEM161B GC05P088219
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMEM161B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM161B-AS1 Gene

Genomic Locations for TMEM161B-AS1 Gene
167,804 bases
Plus strand

Genomic View for TMEM161B-AS1 Gene

Genes around TMEM161B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM161B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM161B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM161B-AS1 Gene

Proteins for TMEM161B-AS1 Gene

Post-translational modifications for TMEM161B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM161B-AS1 Gene

Domains & Families for TMEM161B-AS1 Gene

Gene Families for TMEM161B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM161B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM161B-AS1 Gene

Function for TMEM161B-AS1 Gene

Phenotypes From GWAS Catalog for TMEM161B-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM161B-AS1 Gene

Localization for TMEM161B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM161B-AS1 Gene

Pathways & Interactions for TMEM161B-AS1 Gene

SuperPathways for TMEM161B-AS1 Gene

No Data Available

Interacting Proteins for TMEM161B-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM161B-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TMEM161B-AS1 Gene

Drugs & Compounds for TMEM161B-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM161B-AS1 Gene

mRNA/cDNA for TMEM161B-AS1 Gene

(5) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM161B-AS1 Gene

TMEM161B antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM161B-AS1 Gene

No ASD Table

Relevant External Links for TMEM161B-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TMEM161B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM161B-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM161B-AS1 Gene:

genes like me logo Genes that share expression patterns with TMEM161B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM161B-AS1 Gene

Orthologs for TMEM161B-AS1 Gene

Evolution for TMEM161B-AS1 Gene

Gene Tree for TMEM161B-AS1 (if available)
Gene Tree for TMEM161B-AS1 (if available)

No data available for Orthologs for TMEM161B-AS1 Gene

Paralogs for TMEM161B-AS1 Gene

No data available for Paralogs for TMEM161B-AS1 Gene

Variants for TMEM161B-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM161B-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000018693 -- 88,295,495(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000062439 -- 88,323,633(+) T/C genic_upstream_transcript_variant, intron_variant
rs1000066963 -- 88,307,758(+) T/C genic_upstream_transcript_variant, intron_variant
rs1000097594 -- 88,417,356(+) A/G intron_variant
rs1000134408 -- 88,423,964(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM161B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2662134 CNV deletion 23128226
esv2730445 CNV deletion 23290073
esv3413505 CNV duplication 20981092
esv3566251 CNV deletion 23714750
nsv1140555 CNV deletion 24896259
nsv329205 CNV deletion 16902084
nsv950101 CNV duplication 24416366
nsv955851 CNV deletion 24416366
nsv968962 CNV duplication 23825009

Additional Variant Information for TMEM161B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM161B-AS1 Gene

Disorders for TMEM161B-AS1 Gene

Additional Disease Information for TMEM161B-AS1

No disorders were found for TMEM161B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM161B-AS1 Gene

Publications for TMEM161B-AS1 Gene

  1. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. (PMID: 21890647) Cabili MN … Rinn JL (Genes & development 2011) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for TMEM161B-AS1 Gene

Sources for TMEM161B-AS1 Gene

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