Aliases for TMEM147-AS1 Gene

Subcategory (RNA class) for TMEM147-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TMEM147-AS1 Gene

  • TMEM147 Antisense RNA 1 2 3 5
  • TMEM147-AS1 2 5 165
  • NONHSAG025583.2 91
  • HSALNG0125628 164

External Ids for TMEM147-AS1 Gene

Previous GeneCards Identifiers for TMEM147-AS1 Gene

  • GC19M035767
  • GC19M035925
  • GC19M040543
  • GC19M040965
  • GC19M041392
  • GC19M042391
  • GC19M035950
  • GC19M036820
  • GC19M037439
  • GC19M037778
  • GC19M038078
  • GC19M038365
  • GC19M038659
  • GC19M040151

Summaries for TMEM147-AS1 Gene

GeneCards Summary for TMEM147-AS1 Gene

TMEM147-AS1 (TMEM147 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TMEM147-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMEM147-AS1 Gene

Genomics for TMEM147-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TMEM147-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J035544 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 638.1 +0.5 528 3.4 SP1 CREB1 HNRNPL PRDM10 ZNF629 TFE3 SIX5 RFX5 POLR2A ZNF692 TMEM147-AS1 TMEM147 ZNF146 ZNF792 RBM42 ZNF566 HAUS5 ZNF260 LINC00665 ZFP14
GH19J034994 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 141 +543.8 543830 16.1 SP1 HNRNPL CREB1 GATAD2A YBX1 PRDM10 ZNF629 REST TFE3 SOX13 GRAMD1A TMEM147-AS1 ZNF599 HAUS5 LSM14A KMT2B ZNF792 ZNF302 ZNF181 GARRE1
GH19J036213 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 119.4 -669.6 -669621 4.3 ARHGAP35 SP1 HNRNPL CREB1 ATF7 YBX1 PRDM10 REST ZNF629 ZNF512 ZNF146 ZNF565 lnc-COX7A1-4 ZNF345 ZNF567 TMEM147-AS1 ZNF850 HAUS5 ZNF790 ZNF790-AS1
GH19J035543 Promoter 0.4 EPDnew 600.7 +2.9 2908 0.1 POLR2A TMEM147-AS1 TMEM147 lnc-TMEM147-1 GAPDHS
GH19J035946 Enhancer 1.4 FANTOM5 Ensembl ENCODE 178.1 -401.5 -401472 1.4 CREB1 CTCF ATF7 PRDM10 REST ZNF629 IKZF1 ZNF692 JUND ZNF300 ENSG00000267786 LOC105372383 lnc-LRFN3-2 ZNF345 ZNF567 TMEM147-AS1 ZNF850 HAUS5 PROSER3 KMT2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM147-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TMEM147-AS1 Gene

Genomic Locations for TMEM147-AS1 Gene
chr19:35,540,512-35,546,029
(GRCh38/hg38)
Size:
5,518 bases
Orientation:
Minus strand
chr19:36,031,640-36,036,931
(GRCh37/hg19)
Size:
5,292 bases
Orientation:
Minus strand

Genomic View for TMEM147-AS1 Gene

Genes around TMEM147-AS1 on UCSC Golden Path with GeneCards custom track
TMEM147-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TMEM147-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM147-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM147-AS1 Gene

Proteins for TMEM147-AS1 Gene

Post-translational modifications for TMEM147-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM147-AS1 Gene

Domains & Families for TMEM147-AS1 Gene

Gene Families for TMEM147-AS1 Gene

genes like me logo Genes that share domains with TMEM147-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMEM147-AS1 Gene

Function for TMEM147-AS1 Gene

Phenotypes From GWAS Catalog for TMEM147-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM147-AS1 Gene

Localization for TMEM147-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM147-AS1 Gene

Pathways & Interactions for TMEM147-AS1 Gene

PathCards logo

SuperPathways for TMEM147-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMEM147-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TMEM147-AS1 Gene

Drugs & Compounds for TMEM147-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM147-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TMEM147-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001157CF_9606 lncRNA 3911 3

Ensembl: ENST00000588286 (view in UCSC) ,

LNCipedia: TMEM147-AS1:3,

NONCODE: NONHSAT065869.2,

URS00002DCF34_9606 lncRNA 1627 3

Ensembl: ENST00000589137 (view in UCSC) ,

LNCipedia: TMEM147-AS1:1,

NONCODE: NONHSAT065864.2,

URS000075D776_9606 lncRNA 1627 2

HGNC: 51273,

RefSeq: NR_038396,

URS0000EF166C_9606 lncRNA 4435 1

Ensembl: ENST00000670097 (view in UCSC) ,

URS0000EF2116_9606 lncRNA 3767 1

Ensembl: ENST00000590717 (view in UCSC) ,

TMEM147-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TMEM147-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM147-AS1 Gene

No ASD Table

Relevant External Links for TMEM147-AS1 Gene

GeneLoc Exon Structure for
TMEM147-AS1

Expression for TMEM147-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM147-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TMEM147-AS1

genes like me logo Genes that share expression patterns with TMEM147-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM147-AS1 Gene

Orthologs for TMEM147-AS1 Gene

Evolution for TMEM147-AS1 Gene

ENSEMBL:
Gene Tree for TMEM147-AS1 (if available)
TreeFam:
Gene Tree for TMEM147-AS1 (if available)

No data available for Orthologs for TMEM147-AS1 Gene

Paralogs for TMEM147-AS1 Gene

No data available for Paralogs for TMEM147-AS1 Gene

Variants for TMEM147-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TMEM147-AS1 Gene

SNP ID Clinical significance and condition Chr 19 pos Variation AA Info Type
713729 Benign: not provided 35,542,550(-) A/G MISSENSE_VARIANT
713730 Benign: not provided 35,543,456(-) G/A SYNONYMOUS_VARIANT
rs193920833 Uncertain Significance: Malignant tumor of prostate 35,544,981(-) G/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for TMEM147-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TMEM147-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv953285 CNV deletion 24416366

Additional Variant Information for TMEM147-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM147-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM147-AS1 Gene

Disorders for TMEM147-AS1 Gene

No disorders were found for TMEM147-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM147-AS1 Gene

Publications for TMEM147-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for TMEM147-AS1 Gene

Sources for TMEM147-AS1 Gene