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Aliases for TMEM147-AS1 Gene

Subcategory (RNA class) for TMEM147-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TMEM147-AS1 Gene

  • TMEM147 Antisense RNA 1 2 3 5

External Ids for TMEM147-AS1 Gene

Previous GeneCards Identifiers for TMEM147-AS1 Gene

  • GC19M035767
  • GC19M035925
  • GC19M040543
  • GC19M035950
  • GC19M036820
  • GC19M037439
  • GC19M037778
  • GC19M038078
  • GC19M038365
  • GC19M038659
  • GC19M040151

Summaries for TMEM147-AS1 Gene

GeneCards Summary for TMEM147-AS1 Gene

TMEM147-AS1 (TMEM147 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMEM147-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM147-AS1 Gene

Genomics for TMEM147-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMEM147-AS1 Gene

Promoters and enhancers for TMEM147-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J035544 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 638.1 +0.6 618 3.2 SP1 ZFX ELF3 ZKSCAN8 MNT SIX5 NKRF POLR2A CEBPG CSDE1 TMEM147-AS1 TMEM147 ZNF146 ZNF792 RBM42 ZNF566 HAUS5 ZNF260 LINC00665 ZFP14
GH19J034994 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 152 +545.1 545097 13.5 ZNF473 MTA3 SP1 ZNF652 ZFX ELF3 ZNF148 POLR2A MLLT1 ZNF121 GRAMD1A ENSG00000269303 TMEM147-AS1 ZNF599 HAUS5 LSM14A KMT2B ZNF792 KIAA0355 ZNF302
GH19J036213 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 121.8 -669.2 -669172 4 ZNF473 MTA3 SP1 CC2D1A ZFX MNT SIX5 ZNF148 NKRF POLR2A ZNF146 ZNF565 ZNF567 TMEM147-AS1 ZNF345 HAUS5 ZNF850 ZNF790 ZNF790-AS1 KMT2B
GH19J035897 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 92.4 -358.0 -358029 13 ZNF473 ZNF652 SP1 ZFX CBFA2T2 ZNF148 NKRF POLR2A MLLT1 ZNF121 NFKBID TYROBP HCST ENSG00000280194 ZNF567 TMEM147-AS1 ZNF790 ZNF566 ZNF529 ZNF260
GH19J035136 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 102.5 +405.7 405740 7 ZNF473 ZNF652 ELF3 MNT ZNF148 MLLT1 CEBPG NFIB ZSCAN21 CTCF ENSG00000221857 FXYD7 LGI4 FXYD1 ENSG00000279619 ZNF599 TMEM147-AS1 LSM14A HAUS5 KIAA0355
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMEM147-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM147-AS1 Gene

Genomic Locations for TMEM147-AS1 Gene
chr19:35,540,738-35,546,029
(GRCh38/hg38)
Size:
5,292 bases
Orientation:
Minus strand

Genomic View for TMEM147-AS1 Gene

Genes around TMEM147-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM147-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM147-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM147-AS1 Gene

Proteins for TMEM147-AS1 Gene

Post-translational modifications for TMEM147-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM147-AS1 Gene

Domains & Families for TMEM147-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM147-AS1 Gene

Function for TMEM147-AS1 Gene

Phenotypes From GWAS Catalog for TMEM147-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM147-AS1 Gene

Localization for TMEM147-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM147-AS1 Gene

Pathways & Interactions for TMEM147-AS1 Gene

PathCards logo

SuperPathways for TMEM147-AS1 Gene

No Data Available

Interacting Proteins for TMEM147-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM147-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM147-AS1 Gene

Drugs & Compounds for TMEM147-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM147-AS1 Gene

mRNA/cDNA for TMEM147-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM147-AS1 Gene

No ASD Table

Relevant External Links for TMEM147-AS1 Gene

GeneLoc Exon Structure for
TMEM147-AS1
ECgene alternative splicing isoforms for
TMEM147-AS1

Expression for TMEM147-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM147-AS1 Gene

Orthologs for TMEM147-AS1 Gene

Evolution for TMEM147-AS1 Gene

ENSEMBL:
Gene Tree for TMEM147-AS1 (if available)
TreeFam:
Gene Tree for TMEM147-AS1 (if available)

No data available for Orthologs for TMEM147-AS1 Gene

Paralogs for TMEM147-AS1 Gene

No data available for Paralogs for TMEM147-AS1 Gene

Variants for TMEM147-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM147-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs193920833 uncertain-significance, Malignant tumor of prostate 35,544,981(-) G/A intron_variant
rs1000513581 -- 35,546,017(-) G/A non_coding_transcript_variant
rs1001088815 -- 35,544,644(-) C/T intron_variant
rs1001192119 -- 35,541,806(-) A/G non_coding_transcript_variant
rs1001207725 -- 35,547,327(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM147-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv953285 CNV deletion 24416366

Additional Variant Information for TMEM147-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM147-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM147-AS1 Gene

Disorders for TMEM147-AS1 Gene

Additional Disease Information for TMEM147-AS1

No disorders were found for TMEM147-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM147-AS1 Gene

Publications for TMEM147-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for TMEM147-AS1 Gene

Sources for TMEM147-AS1 Gene

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