Aliases for TMED2-DT Gene

Subcategory (RNA class) for TMED2-DT Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for TMED2-DT Gene

  • TMED2 Divergent Transcript 2 3
  • NONHSAG012614 94
  • HSALNG0094749 169
  • Lnc-EIF2B1-1 170

External Ids for TMED2-DT Gene

Summaries for TMED2-DT Gene

GeneCards Summary for TMED2-DT Gene

TMED2-DT (TMED2 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TMED2-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMED2-DT Gene

Genomics for TMED2-DT Gene

GeneHancer (GH) Regulatory Elements for TMED2-DT Gene

Promoters and enhancers for TMED2-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J123582 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +0.2 226 4.2 SIN3A ZNF24 ZBTB40 SP1 CTCF ZBTB6 FOXA1 RBPJ SMARCE1 POLR2A ENSG00000247373 TMED2 TMED2-DT EIF2B1 DDX55 ATP6V0A2 NCOR2 TCTN2 GTF2H3 SBNO1
GH12J123571 Enhancer 0.8 ENCODE 0.4 +12.9 12858 0.2 ZNF785 SIX5 USF2 CREB1 HCFC1 HLF TEAD4 MAFK CBFA2T2 TFE3 EIF2B1 DDX55 ATP6V0A2 ENSG00000247373 NCOR2 C12orf65 TMED2-DT piR-56186-015
GH12J123558 Enhancer 0.4 Ensembl 0.3 +25.0 25026 2.2 CEBPA POLR2A ZC3H11A CEBPB piR-38537-016 piR-56186-015 ENSG00000247373 EIF2B1 DDX55 ATP6V0A2 OGFOD2 RILPL1 TMED2-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMED2-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMED2-DT Gene

Genomic Locations for TMED2-DT Gene
chr12:123,581,066-123,584,327
(GRCh38/hg38)
Size:
3,262 bases
Orientation:
Minus strand

Genomic View for TMED2-DT Gene

Genes around TMED2-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMED2-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMED2-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMED2-DT Gene

Proteins for TMED2-DT Gene

Post-translational modifications for TMED2-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMED2-DT Gene

Domains & Families for TMED2-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMED2-DT Gene

Function for TMED2-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMED2-DT Gene

Localization for TMED2-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMED2-DT Gene

Pathways & Interactions for TMED2-DT Gene

PathCards logo

SuperPathways for TMED2-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMED2-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMED2-DT Gene

Drugs & Compounds for TMED2-DT Gene

No Compound Related Data Available

Transcripts for TMED2-DT Gene

mRNA/cDNA for TMED2-DT Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) NONCODE transcripts :
(12) RNACentral transcripts :
(2) LncBook transcripts :
(11) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TMED2-DT Gene

No ASD Table

Relevant External Links for TMED2-DT Gene

GeneLoc Exon Structure for
TMED2-DT
ECgene alternative splicing isoforms for
TMED2-DT

Expression for TMED2-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMED2-DT Gene

Orthologs for TMED2-DT Gene

No data available for Orthologs and Evolution for TMED2-DT Gene

Paralogs for TMED2-DT Gene

No data available for Paralogs for TMED2-DT Gene

Variants for TMED2-DT Gene

Sequence variations from dbSNP and Humsavar for TMED2-DT Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000106686 -- 123,584,457(-) A/G/T upstream_transcript_variant
rs1001020749 -- 123,585,456(-) G/A upstream_transcript_variant
rs1001472156 -- 123,584,579(-) C/T upstream_transcript_variant
rs1001876836 -- 123,584,410(-) G/A upstream_transcript_variant
rs1002399278 -- 123,585,363(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TMED2-DT Gene

Variant ID Type Subtype PubMed ID
dgv523e212 CNV loss 25503493
esv2422416 CNV duplication 17116639
nsv1042181 CNV gain 25217958

Additional Variant Information for TMED2-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMED2-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMED2-DT Gene

Disorders for TMED2-DT Gene

No disorders were found for TMED2-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TMED2-DT Gene

Publications for TMED2-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for TMED2-DT Gene

Products for TMED2-DT Gene

Sources for TMED2-DT Gene