TMED2-DT Gene (RNA Gene)

TMED2 Divergent Transcript

GC12M123582
GIFtS:
10

Aliases for TMED2-DT Gene

Subcategory (RNA class) for TMED2-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for TMED2-DT Gene

  • TMED2 Divergent Transcript 2 3 5
  • NONHSAG012614 92
  • HSALNG0094749 167
  • Lnc-EIF2B1-1 168
  • TMED2-DT 2

External Ids for TMED2-DT Gene

Summaries for TMED2-DT Gene

GeneCards Summary for TMED2-DT Gene

TMED2-DT (TMED2 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TMED2-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMED2-DT Gene

Genomics for TMED2-DT Gene

GeneHancer (GH) Regulatory Elements for TMED2-DT Gene

Promoters and enhancers for TMED2-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMED2-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMED2-DT Gene

Genomic Locations for TMED2-DT Gene
chr12:123,575,002-123,585,115
(GRCh38/hg38)
Size:
10,114 bases
Orientation:
Minus strand
chr12:124,066,767-124,069,662
(GRCh37/hg19)
Size:
2,896 bases
Orientation:
Minus strand

Genomic View for TMED2-DT Gene

Genes around TMED2-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMED2-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMED2-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TMED2-DT Gene

Proteins for TMED2-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TMED2-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMED2-DT Gene

Domains & Families for TMED2-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMED2-DT Gene

Function for TMED2-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TMED2-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMED2-DT Gene

Localization for TMED2-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMED2-DT Gene

Pathways & Interactions for TMED2-DT Gene

PathCards logo

SuperPathways for TMED2-DT Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TMED2-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TMED2-DT Gene

Drugs & Compounds for TMED2-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TMED2-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TMED2-DT Gene

14 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
2 LncBook transcripts :
13 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TMED2-DT Gene

No ASD Table

Relevant External Links for TMED2-DT Gene

GeneLoc Exon Structure for
TMED2-DT

Expression for TMED2-DT Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMED2-DT Gene

Orthologs for TMED2-DT Gene

Evolution for TMED2-DT Gene

ENSEMBL:
Gene Tree for TMED2-DT (if available)
TreeFam:
Gene Tree for TMED2-DT (if available)

No data available for Orthologs for TMED2-DT Gene

Paralogs for TMED2-DT Gene

No data available for Paralogs for TMED2-DT Gene

Variants for TMED2-DT Gene

Additional dbSNP identifiers (rs#s) for TMED2-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for TMED2-DT Gene

Variant ID Type Subtype PubMed ID
dgv523e212 CNV loss 25503493
esv2422416 CNV duplication 17116639
nsv1042181 CNV gain 25217958

Additional Variant Information for TMED2-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMED2-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TMED2-DT Gene

Disorders for TMED2-DT Gene

No disorders were found for TMED2-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TMED2-DT Gene

Publications for TMED2-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for TMED2-DT Gene

Products for TMED2-DT Gene

Sources for TMED2-DT Gene