Aliases for TMCO1-AS1 Gene

Subcategory (RNA class) for TMCO1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TMCO1-AS1 Gene

  • TMCO1 Antisense RNA 1 2 3 5
  • TMCO1-AS1 2 5
  • NONHSAG003345.2 91
  • NONHSAG003346.2 91
  • HSALNG0008155 164
  • Lnc-UCK2-1 165

External Ids for TMCO1-AS1 Gene

Summaries for TMCO1-AS1 Gene

GeneCards Summary for TMCO1-AS1 Gene

TMCO1-AS1 (TMCO1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TMCO1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMCO1-AS1 Gene

Genomics for TMCO1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TMCO1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J165767 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 612.7 +0.1 89 2.8 BRCA1 ARHGAP35 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 SIX5 LEF1 TMCO1-AS1 TMCO1 UCK2 ALDH9A1 ENSG00000215835 piR-49204-001
GH01J165894 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.7 +129.1 129064 7.5 ATF7 PRDM10 ZIC2 ZSCAN4 POLR2A ZNF341 PKNOX1 CEBPA ZNF561 MNT UCK2 ENSG00000236364 TMCO1 TMCO1-AS1 FAM78B-AS1 lnc-MGST3-5 piR-51137-004 FAM78B
GH01J165868 Enhancer 1.3 Ensembl ENCODE dbSUPER 12 +103.5 103520 8.9 SP1 GATAD2A CTCF TEAD4 LEF1 IKZF1 NFKBIZ RCOR2 ZNF7 STAT3 UCK2 TMCO1 TMCO1-AS1 ENSG00000236364 FAM78B-AS1 piR-51137-004 FAM78B
GH01J165737 Enhancer 0.6 Ensembl 23.1 -30.3 -30329 1.6 ZNF600 CEBPA CEBPB OSR2 FOXP1 NFIC CEBPG ATF4 ATF3 GLIS1 TMCO1-AS1 ALDH9A1 TMCO1 HE856227 UCK2
GH01J165877 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.4 +116.4 116398 15.9 ZNF7 BACH1 FOXA1 RELA TCF12 IKZF2 SP1 TRIM22 ZNF341 PKNOX1 UCK2 TMCO1 TMCO1-AS1 FAM78B-AS1 piR-51137-004 ENSG00000236364 FAM78B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMCO1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TMCO1-AS1 Gene

Genomic Locations for TMCO1-AS1 Gene
chr1:165,768,929-165,787,406
(GRCh38/hg38)
Size:
18,478 bases
Orientation:
Plus strand
chr1:165,738,166-165,744,844
(GRCh37/hg19)
Size:
6,679 bases
Orientation:
Plus strand

Genomic View for TMCO1-AS1 Gene

Genes around TMCO1-AS1 on UCSC Golden Path with GeneCards custom track
TMCO1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TMCO1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMCO1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMCO1-AS1 Gene

Proteins for TMCO1-AS1 Gene

Post-translational modifications for TMCO1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMCO1-AS1 Gene

Domains & Families for TMCO1-AS1 Gene

Gene Families for TMCO1-AS1 Gene

genes like me logo Genes that share domains with TMCO1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMCO1-AS1 Gene

Function for TMCO1-AS1 Gene

Phenotypes From GWAS Catalog for TMCO1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMCO1-AS1 Gene

Localization for TMCO1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMCO1-AS1 Gene

Pathways & Interactions for TMCO1-AS1 Gene

PathCards logo

SuperPathways for TMCO1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMCO1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TMCO1-AS1 Gene

Drugs & Compounds for TMCO1-AS1 Gene

No Compound Related Data Available

Transcripts for TMCO1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TMCO1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000035022B_9606 lncRNA 2150 3

Ensembl: ENST00000423121 (view in UCSC) ,

LNCipedia: lnc-UCK2-1:1,

NONCODE: NONHSAT007335.2,

URS00007E40F5_9606 lncRNA 2148 3

HGNC: 54046,

RefSeq: NR_125374,

LNCipedia: lnc-UCK2-1:9,

URS00008B6C76_9606 lncRNA 2013 3

LncBook: HSALNT0016914,

LNCipedia: lnc-UCK2-1:8,

NONCODE: NONHSAT007337.2,

URS00008B5E67_9606 lncRNA 1847 3

LncBook: HSALNT0016913,

LNCipedia: lnc-UCK2-1:3,

NONCODE: NONHSAT007336.2,

URS0000D5E2A6_9606 lncRNA 4982 2

LncBook: HSALNT0016911,

LNCipedia: lnc-UCK2-1:6,

TMCO1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TMCO1-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TMCO1-AS1 Gene

No ASD Table

Relevant External Links for TMCO1-AS1 Gene

GeneLoc Exon Structure for
TMCO1-AS1

Expression for TMCO1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TMCO1-AS1

SOURCE GeneReport for Unigene cluster for TMCO1-AS1 Gene:

Hs.633824
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMCO1-AS1 Gene

Orthologs for TMCO1-AS1 Gene

Evolution for TMCO1-AS1 Gene

ENSEMBL:
Gene Tree for TMCO1-AS1 (if available)
TreeFam:
Gene Tree for TMCO1-AS1 (if available)

No data available for Orthologs for TMCO1-AS1 Gene

Paralogs for TMCO1-AS1 Gene

No data available for Paralogs for TMCO1-AS1 Gene

Variants for TMCO1-AS1 Gene

Additional dbSNP identifiers (rs#s) for TMCO1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TMCO1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv518886 CNV gain 19592680

Additional Variant Information for TMCO1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMCO1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TMCO1-AS1 Gene

Disorders for TMCO1-AS1 Gene

No disorders were found for TMCO1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TMCO1-AS1 Gene

Publications for TMCO1-AS1 Gene

  1. Genome-wide association study and meta-analysis of intraocular pressure. (PMID: 24002674) Ozel AB … Li JZ (Human genetics 2014) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for TMCO1-AS1 Gene

Products for TMCO1-AS1 Gene

Sources for TMCO1-AS1 Gene