Aliases for TMC3-AS1 Gene

Subcategory (RNA class) for TMC3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for TMC3-AS1 Gene

  • TMC3 Antisense RNA 1 2 3 5
  • TMC3-AS1 2 168
  • HSALNG0107648 167
  • NONHSAG017628 92
  • Lnc-IL16-11 168
  • Lnc-IL16-13 168
  • Lnc-IL16-12 168

External Ids for TMC3-AS1 Gene

Summaries for TMC3-AS1 Gene

GeneCards Summary for TMC3-AS1 Gene

TMC3-AS1 (TMC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TMC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMC3-AS1 Gene

Genomics for TMC3-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMC3-AS1 Gene

Promoters and enhancers for TMC3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J081321 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.5 -541 3.6 ZNF217 SIN3A NRF1 POLR2G SP1 PHF8 ZNF639 ZIC2 POLR2A ZBTB10 STARD5 TMC3-AS1 ENSG00000286488
GH15J081337 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.3 +14.1 14068 2.4 ZNF639 ZIC2 TRIM28 OSR2 SP2 ZBTB17 ZNF263 FOS CEBPB PBX2 TMC3 TMC3-AS1 STARD5 ENSG00000273920
GH15J081326 Enhancer 0.8 ENCODE dbSUPER 4.9 +3.0 3032 2 ZNF316 MAFF MAFK NFE2 EZH2 ZNF146 MAFG BHLHE40 HNF4A HLF TMC3 STARD5 TMC3-AS1 ENSG00000273920
GH15J081330 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +6.9 6949 1.2 NRF1 ZNF592 E2F6 EP400 ZNF639 MEIS2 ZBTB33 TEAD2 KDM1A TEAD4 TMC3 ENSG00000273920 TMC3-AS1
GH15J081333 Enhancer 0.6 Ensembl ENCODE 0.4 +10.6 10647 2 RAD21 ZNF384 CTCF MAFK ENSG00000273920 TMC3 ENSG00000271725 TMC3-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMC3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMC3-AS1 Gene

Genomic Locations for TMC3-AS1 Gene
chr15:81,324,333-81,518,200
(GRCh38/hg38)
Size:
193,868 bases
Orientation:
Plus strand
chr15:81,616,718-81,654,378
(GRCh37/hg19)
Size:
37,661 bases
Orientation:
Plus strand

Genomic View for TMC3-AS1 Gene

Genes around TMC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMC3-AS1 Gene

Proteins for TMC3-AS1 Gene

Post-translational modifications for TMC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMC3-AS1 Gene

Domains & Families for TMC3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMC3-AS1 Gene

Function for TMC3-AS1 Gene

Phenotypes From GWAS Catalog for TMC3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMC3-AS1 Gene

Localization for TMC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMC3-AS1 Gene

Pathways & Interactions for TMC3-AS1 Gene

PathCards logo

SuperPathways for TMC3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TMC3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TMC3-AS1 Gene

Drugs & Compounds for TMC3-AS1 Gene

No Compound Related Data Available

Transcripts for TMC3-AS1 Gene

mRNA/cDNA for TMC3-AS1 Gene

31 RNACentral transcripts :
1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
16 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
14 NONCODE transcripts :
13 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TMC3-AS1 Gene

No ASD Table

Relevant External Links for TMC3-AS1 Gene

GeneLoc Exon Structure for
TMC3-AS1

Expression for TMC3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMC3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TMC3-AS1

genes like me logo Genes that share expression patterns with TMC3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMC3-AS1 Gene

Orthologs for TMC3-AS1 Gene

Evolution for TMC3-AS1 Gene

ENSEMBL:
Gene Tree for TMC3-AS1 (if available)
TreeFam:
Gene Tree for TMC3-AS1 (if available)

No data available for Orthologs for TMC3-AS1 Gene

Paralogs for TMC3-AS1 Gene

No data available for Paralogs for TMC3-AS1 Gene

Variants for TMC3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TMC3-AS1 Gene

SNP ID Clinical significance and condition Chr 15 pos Variation AA Info Type
rs150843673 Benign: not specified 81,332,588(+) G/T NONSENSE

Additional dbSNP identifiers (rs#s) for TMC3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TMC3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2661332 CNV deletion 23128226
esv3552754 CNV deletion 23714750
esv3637033 CNV loss 21293372
nsv1048106 CNV gain 25217958
nsv1048788 CNV loss 25217958
nsv1054305 CNV gain 25217958
nsv1108970 CNV deletion 24896259
nsv472882 CNV novel sequence insertion 20440878
nsv520339 CNV loss 19592680

Additional Variant Information for TMC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMC3-AS1 Gene

Disorders for TMC3-AS1 Gene

Additional Disease Information for TMC3-AS1

No disorders were found for TMC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMC3-AS1 Gene

Publications for TMC3-AS1 Gene

  1. Parkinson disease loci in the mid-western Amish. (PMID: 23793441) Davis MF … Haines JL (Human genetics 2013) 3 54
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 54

Products for TMC3-AS1 Gene

Sources for TMC3-AS1 Gene