Aliases for TMA16P2 Gene

Aliases for TMA16P2 Gene

  • Translation Machinery Associated 16 Homolog Pseudogene 2 2 3 5
  • FLJ11184 Pseudogene 3
  • TMA16P2 5

External Ids for TMA16P2 Gene

Previous GeneCards Identifiers for TMA16P2 Gene

  • GC01M046313

Summaries for TMA16P2 Gene

GeneCards Summary for TMA16P2 Gene

TMA16P2 (Translation Machinery Associated 16 Homolog Pseudogene 2) is a Pseudogene.

Additional gene information for TMA16P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TMA16P2 Gene

Genomics for TMA16P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TMA16P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J045846 Enhancer 0.5 Ensembl 600.7 +0.7 709 0.8 CEBPB CEBPG ATF3 JUN HLF TMA16P2 MAST2 GPBP1L1 TMEM69 TSPAN1 P3R3URF PIK3R3
GH01J045847 Enhancer 0.3 Ensembl ENCODE 600.7 -0.4 -382 1 TMA16P2 CCDC163 GPBP1L1 TMEM69 MAST2 TSPAN1 P3R3URF PIK3R3 piR-61101-020
GH01J045801 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.3 +43.6 43647 4.3 ARHGAP35 HNRNPL ATF7 TEAD4 PRDM10 ZNF629 LEF1 IKZF1 ZNF692 POLR2A MAST2 CCDC163 GPBP1L1 RPL7AP16 EFCAB14-AS1 IPP CCDC17 TMEM69 MUTYH ZSWIM5
GH01J045843 Enhancer 0.6 Ensembl 0.7 +4.1 4142 0.8 PRDM1 REST RAD21 CTCF RUNX3 SMC3 ZNF318 ZNF654 DPF2 HDAC2 MAST2 GPBP1L1 TMEM69 P3R3URF PIK3R3 TSPAN1 TMA16P2
GH01J045822 Enhancer 0.8 Ensembl ENCODE 0.4 +25.0 24968 0.8 GATAD2A RXRB GABPA TCF7 FOXA2 SAP130 HOMEZ ARID4B TEAD3 HMG20A MAST2 GPBP1L1 TMEM69 CCDC17 TMA16P2 PIK3R3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TMA16P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TMA16P2 Gene

Genomic Locations for TMA16P2 Gene
chr1:45,845,343-45,847,719
(GRCh38/hg38)
Size:
2,377 bases
Orientation:
Minus strand
chr1:46,311,010-46,313,391
(GRCh37/hg19)
Size:
2,382 bases
Orientation:
Minus strand

Genomic View for TMA16P2 Gene

Genes around TMA16P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMA16P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMA16P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMA16P2 Gene

Proteins for TMA16P2 Gene

Post-translational modifications for TMA16P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMA16P2 Gene

Domains & Families for TMA16P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TMA16P2 Gene

Function for TMA16P2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMA16P2 Gene

Localization for TMA16P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMA16P2 Gene

Pathways & Interactions for TMA16P2 Gene

PathCards logo

SuperPathways for TMA16P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMA16P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TMA16P2 Gene

Drugs & Compounds for TMA16P2 Gene

No Compound Related Data Available

Transcripts for TMA16P2 Gene

mRNA/cDNA for TMA16P2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TMA16P2 Gene

No ASD Table

Relevant External Links for TMA16P2 Gene

GeneLoc Exon Structure for
TMA16P2

Expression for TMA16P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMA16P2 Gene

genes like me logo Genes that share expression patterns with TMA16P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMA16P2 Gene

Orthologs for TMA16P2 Gene

Evolution for TMA16P2 Gene

ENSEMBL:
Gene Tree for TMA16P2 (if available)
TreeFam:
Gene Tree for TMA16P2 (if available)

No data available for Orthologs for TMA16P2 Gene

Paralogs for TMA16P2 Gene

No data available for Paralogs for TMA16P2 Gene

Variants for TMA16P2 Gene

Additional Variant Information for TMA16P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMA16P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMA16P2 Gene

Disorders for TMA16P2 Gene

No disorders were found for TMA16P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TMA16P2 Gene

Publications for TMA16P2 Gene

No publications were found for TMA16P2 Gene.

No data available for Mastermind for TMA16P2 Gene

Products for TMA16P2 Gene

Sources for TMA16P2 Gene