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Aliases for TMA16 Gene

Aliases for TMA16 Gene

  • Translation Machinery Associated 16 Homolog 2 3 5
  • C4orf43 3 4
  • Translation Machinery Associated 16 Homolog (S. Cerevisiae) 2
  • Translation Machinery-Associated Protein 16 3
  • Chromosome 4 Open Reading Frame 43 2
  • UPF0534 Protein C4orf43 3

External Ids for TMA16 Gene

Previous HGNC Symbols for TMA16 Gene

  • C4orf43

Previous GeneCards Identifiers for TMA16 Gene

  • GC04P164416

Summaries for TMA16 Gene

GeneCards Summary for TMA16 Gene

TMA16 (Translation Machinery Associated 16 Homolog) is a Protein Coding gene.

Additional gene information for TMA16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMA16 Gene

Genomics for TMA16 Gene

GeneHancer (GH) Regulatory Elements for TMA16 Gene

Promoters and enhancers for TMA16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I163493 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 553.1 +0.5 451 3.4 PKNOX1 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 TMA16 MARCH1 ENSG00000273449 TKTL2
GH04I163550 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.4 +56.1 56112 0.8 GTF2F1 CTCF USF1 RB1 MAX SIN3A ZNF384 RAD21 YY1 ZNF507 MARCH1 TMA16 TKTL2 ENSG00000273449 PIR37872
GH04I163544 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.3 +50.6 50631 1.4 CTCF BACH1 MZF1 RAD21 CC2D1A FOXK2 POLR2A SMC3 ZNF143 ZNF444 MARCH1 TMA16 TKTL2 ENSG00000273449 PIR37872
GH04I163866 Enhancer 0.6 ENCODE 12.6 +372.9 372869 1 JUN USF2 MNT ZNF354B FOSL1 MITF JUND CREB1 FOS TMA16 GC04M163825 YWHAQP4 MARCH1 GC04M163839
GH04I163535 Enhancer 0.5 ENCODE dbSUPER 12.3 +42.0 41976 1 CTCF MARCH1 TMA16 TKTL2 ENSG00000273449 PIR37872
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMA16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMA16 Gene

Genomic Locations for TMA16 Gene
chr4:163,494,289-163,520,539
(GRCh38/hg38)
Size:
26,251 bases
Orientation:
Plus strand
chr4:164,415,594-164,441,691
(GRCh37/hg19)

Genomic View for TMA16 Gene

Genes around TMA16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMA16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMA16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMA16 Gene

Proteins for TMA16 Gene

  • Protein details for TMA16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96EY4-TMA16_HUMAN
    Recommended name:
    Translation machinery-associated protein 16
    Protein Accession:
    Q96EY4
    Secondary Accessions:
    • Q0P6E4
    • Q0P6J1
    • Q9NUR7

    Protein attributes for TMA16 Gene

    Size:
    203 amino acids
    Molecular mass:
    23864 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMA16 Gene

Post-translational modifications for TMA16 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TMA16 Gene

No data available for DME Specific Peptides for TMA16 Gene

Domains & Families for TMA16 Gene

Gene Families for TMA16 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TMA16 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TMA16 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96EY4

UniProtKB/Swiss-Prot:

TMA16_HUMAN :
  • Belongs to the UPF0534 family.
Family:
  • Belongs to the UPF0534 family.
genes like me logo Genes that share domains with TMA16: view

Function for TMA16 Gene

Phenotypes From GWAS Catalog for TMA16 Gene

Gene Ontology (GO) - Molecular Function for TMA16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with TMA16: view
genes like me logo Genes that share phenotypes with TMA16: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMA16 Gene

Localization for TMA16 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMA16 gene
Compartment Confidence
nucleus 5
extracellular 1
mitochondrion 1
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for TMA16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA --
GO:0005840 colocalizes_with ribosome IBA --
genes like me logo Genes that share ontologies with TMA16: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TMA16 Gene

Pathways & Interactions for TMA16 Gene

SuperPathways for TMA16 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMA16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMA16 Gene

Drugs & Compounds for TMA16 Gene

No Compound Related Data Available

Transcripts for TMA16 Gene

Unigene Clusters for TMA16 Gene

Translation machinery associated 16 homolog (S. cerevisiae):
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMA16 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2: -

Relevant External Links for TMA16 Gene

GeneLoc Exon Structure for
TMA16
ECgene alternative splicing isoforms for
TMA16

Expression for TMA16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMA16 Gene

Protein differential expression in normal tissues from HIPED for TMA16 Gene

This gene is overexpressed in Pancreas (16.8), Breast (11.7), and Lung (7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TMA16 Gene



Protein tissue co-expression partners for TMA16 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TMA16 Gene:

TMA16

SOURCE GeneReport for Unigene cluster for TMA16 Gene:

Hs.267446

Evidence on tissue expression from TISSUES for TMA16 Gene

  • Muscle(4.2)
genes like me logo Genes that share expression patterns with TMA16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMA16 Gene

Orthologs for TMA16 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMA16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMA16 33 34
  • 99.67 (n)
dog
(Canis familiaris)
Mammalia TMA16 33 34
  • 90.15 (n)
cow
(Bos Taurus)
Mammalia TMA16 33 34
  • 86.7 (n)
mouse
(Mus musculus)
Mammalia Tma16 33 16 34
  • 83.5 (n)
rat
(Rattus norvegicus)
Mammalia Tma16 33
  • 83 (n)
oppossum
(Monodelphis domestica)
Mammalia TMA16 34
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMA16 34
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves C4H4ORF43 33
  • 69.46 (n)
TMA16 34
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMA16 34
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tma16 33
  • 66.84 (n)
Str.10731 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.11691 33
zebrafish
(Danio rerio)
Actinopterygii tma16 33 34
  • 65.26 (n)
Dr.17669 33
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003543 33
  • 48.61 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG15027 33 34
  • 47.56 (n)
Species where no ortholog for TMA16 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMA16 Gene

ENSEMBL:
Gene Tree for TMA16 (if available)
TreeFam:
Gene Tree for TMA16 (if available)

Paralogs for TMA16 Gene

Pseudogenes.org Pseudogenes for TMA16 Gene

genes like me logo Genes that share paralogs with TMA16: view

No data available for Paralogs for TMA16 Gene

Variants for TMA16 Gene

Sequence variations from dbSNP and Humsavar for TMA16 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000058593 -- 163,500,952(+) A/G intron_variant
rs10000612 -- 163,503,818(+) A/G intron_variant
rs1000143133 -- 163,519,133(+) T/C intron_variant
rs1000178692 -- 163,513,827(+) A/G intron_variant
rs1000249388 -- 163,513,529(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TMA16 Gene

Variant ID Type Subtype PubMed ID
esv2728665 CNV deletion 23290073
esv3564913 CNV deletion 23714750
nsv1015505 CNV gain 25217958
nsv1028437 CNV gain 25217958
nsv1030184 CNV loss 25217958

Variation tolerance for TMA16 Gene

Residual Variation Intolerance Score: 82.3% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TMA16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMA16

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMA16 Gene

Disorders for TMA16 Gene

Additional Disease Information for TMA16

No disorders were found for TMA16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMA16 Gene

Publications for TMA16 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  4. Serine ADP-Ribosylation Depends on HPF1. (PMID: 28190768) Bonfiglio JJ … Matic I (Molecular cell 2017) 4 58
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 58

Products for TMA16 Gene

Sources for TMA16 Gene

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