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Aliases for TM4SF1-AS1 Gene

Subcategory (RNA class) for TM4SF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TM4SF1-AS1 Gene

  • TM4SF1 Antisense RNA 1 2 3 5
  • TM4SF1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TM4SF1-AS1 Gene

Previous GeneCards Identifiers for TM4SF1-AS1 Gene

  • GC00U933309
  • GC03P149096

Summaries for TM4SF1-AS1 Gene

GeneCards Summary for TM4SF1-AS1 Gene

TM4SF1-AS1 (TM4SF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TM4SF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TM4SF1-AS1 Gene

Genomics for TM4SF1-AS1 Gene

GeneHancer (GH) Regulatory Elements for TM4SF1-AS1 Gene

Promoters and enhancers for TM4SF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I149338 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -36.8 -36803 5.6 ELF3 FOXA2 SIN3A RAD21 ETS1 RFX5 ELK1 ZNF366 RCOR1 FOS TM4SF1 TM4SF1-AS1 HPS3 TM4SF18 GC03M149358
GH03I149297 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.1 -77.8 -77782 4.3 ATF1 PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A FEZF1 ZNF2 BRCA1 YY1 TM4SF18 TM4SF1-AS1 TM4SF1 CP CPHL1P ENSG00000244468
GH03I149352 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.6 -25.1 -25129 1.1 HDGF ELF3 FOXA2 ARID4B DMAP1 ZNF2 ZNF48 RAD21 YY1 ZNF143 TM4SF1 TM4SF1-AS1 GC03M149358 TM4SF18
GH03I149355 Enhancer 1.1 ENCODE dbSUPER 11.5 -21.3 -21326 2.4 ELF3 FOXA2 MLX ARID4B DMAP1 RAD21 DNMT3B THRB ZNF48 ZSCAN9 GC03M149358 RPS25P5 TM4SF1 TM4SF1-AS1 TM4SF18
GH03I149442 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.5 +65.6 65589 2 SMAD1 RB1 JUN BACH1 BMI1 ATF7 FOS IKZF2 ZNF687 TRIM22 GC03M149445 TM4SF4 TM4SF1 TM4SF1-AS1 TM4SF18 RPL32P8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TM4SF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TM4SF1-AS1 Gene

Genomic Locations for TM4SF1-AS1 Gene
chr3:149,377,778-149,386,583
(GRCh38/hg38)
Size:
8,806 bases
Orientation:
Plus strand
chr3:149,095,565-149,104,370
(GRCh37/hg19)

Genomic View for TM4SF1-AS1 Gene

Genes around TM4SF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TM4SF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TM4SF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TM4SF1-AS1 Gene

Proteins for TM4SF1-AS1 Gene

Post-translational modifications for TM4SF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TM4SF1-AS1 Gene

Domains & Families for TM4SF1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TM4SF1-AS1 Gene

Function for TM4SF1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TM4SF1-AS1 Gene

Localization for TM4SF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TM4SF1-AS1 Gene

Pathways & Interactions for TM4SF1-AS1 Gene

SuperPathways for TM4SF1-AS1 Gene

No Data Available

Interacting Proteins for TM4SF1-AS1 Gene

Gene Ontology (GO) - Biological Process for TM4SF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TM4SF1-AS1 Gene

Drugs & Compounds for TM4SF1-AS1 Gene

No Compound Related Data Available

Transcripts for TM4SF1-AS1 Gene

mRNA/cDNA for TM4SF1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TM4SF1-AS1 Gene

No ASD Table

Relevant External Links for TM4SF1-AS1 Gene

GeneLoc Exon Structure for
TM4SF1-AS1
ECgene alternative splicing isoforms for
TM4SF1-AS1

Expression for TM4SF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TM4SF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TM4SF1-AS1 Gene

This gene is overexpressed in Minor Salivary Gland (x9.8), Pancreas (x5.6), and Breast - Mammary Tissue (x5.3).
genes like me logo Genes that share expression patterns with TM4SF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TM4SF1-AS1 Gene

Orthologs for TM4SF1-AS1 Gene

Evolution for TM4SF1-AS1 Gene

ENSEMBL:
Gene Tree for TM4SF1-AS1 (if available)
TreeFam:
Gene Tree for TM4SF1-AS1 (if available)

No data available for Orthologs for TM4SF1-AS1 Gene

Paralogs for TM4SF1-AS1 Gene

No data available for Paralogs for TM4SF1-AS1 Gene

Variants for TM4SF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TM4SF1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000220682 -- 149,383,856(+) G/T intron_variant
rs1000322759 -- 149,379,041(+) C/T intron_variant
rs1000512158 -- 149,386,922(+) G/A downstream_transcript_variant
rs1000544177 -- 149,375,779(+) A/G upstream_transcript_variant
rs1000582001 -- 149,385,331(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TM4SF1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1009027 CNV insertion 20482838
esv1202095 CNV insertion 17803354
nsv512814 CNV insertion 21212237
nsv998572 CNV loss 25217958

Additional Variant Information for TM4SF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TM4SF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TM4SF1-AS1 Gene

Disorders for TM4SF1-AS1 Gene

Additional Disease Information for TM4SF1-AS1

No disorders were found for TM4SF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TM4SF1-AS1 Gene

Publications for TM4SF1-AS1 Gene

  1. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. (PMID: 19379481) Guffanti A … De Bellis G (BMC genomics 2009) 3 58

Products for TM4SF1-AS1 Gene

Sources for TM4SF1-AS1 Gene

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