Aliases for TLR8-AS1 Gene

Subcategory (RNA class) for TLR8-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for TLR8-AS1 Gene

  • TLR8 Antisense RNA 1 2 3 5
  • TLR8-AS1 2 5 165
  • TLR8 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG054024.2 91
  • GS1-324M7.6 3

External Ids for TLR8-AS1 Gene

Summaries for TLR8-AS1 Gene

GeneCards Summary for TLR8-AS1 Gene

TLR8-AS1 (TLR8 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TLR8-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TLR8-AS1 Gene

Genomics for TLR8-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TLR8-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ012790 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 11.8 +151.5 151499 2.8 HNRNPL PRDM10 POLR2A LARP7 ZIC2 RBFOX2 PATZ1 EZH2 ZNF341 ZFX PRPS2 TLR8 TLR8-AS1 piR-43105-682 TLR7
GH0XJ012967 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.8 -33.9 -33888 20.8 SP1 CTCF HNRNPL PRDM10 REST IKZF1 KDM1A POLR2A BACH1 JUND TMSB4X HSALNG0136687 FAM9C TLR8-AS1 PRPS2 TLR7 TLR8 lnc-FAM9C-8 piR-31292-220 piR-31508-056
GH0XJ013024 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 11.7 -84.8 -84843 6.4 CREB1 ZHX2 FOXA1 RELA ZNF24 REST IKZF2 ATF7 EED ARID3A FAM9C TMSB4X TLR8-AS1 TLR8 LOC105373133 lnc-TMSB4X-10 RF00017-8164
GH0XJ013472 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 11.9 -530.5 -530480 3.1 SP1 CTCF IKZF2 RCOR1 EED SIN3A DPF2 RELB RUNX3 GATAD2B TMSB4X TLR8-AS1 TLR8 HSALNG0136713 piR-57460-695 EGFL6 ATXN3L
GH0XJ012987 Enhancer 1 ENCODE dbSUPER 11.5 -45.4 -45424 2.1 CREB1 JUND FOXA1 REST SP1 SOX6 ATF7 SOX13 CTBP1 CEBPB FAM9C TLR8-AS1 TLR8 piR-31292-220 TMSB4X hsa-miR-5096-184 LOC105373133
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TLR8-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TLR8-AS1 Gene

Genomic Locations for TLR8-AS1 Gene
chrX:12,902,817-12,943,300
(GRCh38/hg38)
Size:
40,484 bases
Orientation:
Minus strand
chrX:12,920,936-12,926,455
(GRCh37/hg19)
Size:
5,520 bases
Orientation:
Minus strand

Genomic View for TLR8-AS1 Gene

Genes around TLR8-AS1 on UCSC Golden Path with GeneCards custom track
TLR8-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TLR8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TLR8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TLR8-AS1 Gene

Proteins for TLR8-AS1 Gene

Post-translational modifications for TLR8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TLR8-AS1 Gene

Domains & Families for TLR8-AS1 Gene

Gene Families for TLR8-AS1 Gene

genes like me logo Genes that share domains with TLR8-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TLR8-AS1 Gene

Function for TLR8-AS1 Gene

Phenotypes From GWAS Catalog for TLR8-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TLR8-AS1 Gene

Localization for TLR8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TLR8-AS1 Gene

Pathways & Interactions for TLR8-AS1 Gene

PathCards logo

SuperPathways for TLR8-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TLR8-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TLR8-AS1 Gene

Drugs & Compounds for TLR8-AS1 Gene

No Compound Related Data Available

Transcripts for TLR8-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TLR8-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D4A0_9606 lncRNA 1589 2

HGNC: 40720,

RefSeq: NR_030727,

URS000039C1A2_9606 lncRNA 1349 2

Ensembl: ENST00000451564 (view in UCSC) ,

LNCipedia: TLR8-AS1:2,

URS00008B7E94_9606 lncRNA 1589 2

LNCipedia: TLR8-AS1:1,

NONCODE: NONHSAT136273.2,

TLR8-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TLR8-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TLR8-AS1 Gene

No ASD Table

Relevant External Links for TLR8-AS1 Gene

GeneLoc Exon Structure for
TLR8-AS1

Expression for TLR8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TLR8-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TLR8-AS1 Gene

This gene is overexpressed in Whole Blood (x21.6) and Lung (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TLR8-AS1

SOURCE GeneReport for Unigene cluster for TLR8-AS1 Gene:

Hs.685035
genes like me logo Genes that share expression patterns with TLR8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TLR8-AS1 Gene

Orthologs for TLR8-AS1 Gene

Evolution for TLR8-AS1 Gene

ENSEMBL:
Gene Tree for TLR8-AS1 (if available)
TreeFam:
Gene Tree for TLR8-AS1 (if available)

No data available for Orthologs for TLR8-AS1 Gene

Paralogs for TLR8-AS1 Gene

No data available for Paralogs for TLR8-AS1 Gene

Variants for TLR8-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TLR8-AS1 Gene

SNP ID Clinical significance and condition Chr 0X pos Variation AA Info Type
739927 Likely Benign: not provided 12,919,092(-) A/G MISSENSE_VARIANT
754403 Likely Benign: not provided 12,920,267(-) C/T SYNONYMOUS_VARIANT
773100 Benign: not provided 12,921,287(-) A/G SYNONYMOUS_VARIANT
784429 Benign: not provided 12,919,601(-) C/T SYNONYMOUS_VARIANT
788047 Benign: not provided 12,921,184(-) G/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for TLR8-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TLR8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2223e212 CNV loss 25503493
esv3573586 CNV loss 25503493

Additional Variant Information for TLR8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TLR8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TLR8-AS1 Gene

Disorders for TLR8-AS1 Gene

Additional Disease Information for TLR8-AS1

No disorders were found for TLR8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TLR8-AS1 Gene

Publications for TLR8-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for TLR8-AS1 Gene

Sources for TLR8-AS1 Gene