Aliases for TLR8-AS1 Gene

Data sources for TLR8-AS1 Gene:

Subcategory (RNA class) for TLR8-AS1 Gene

lncRNA

Aliases for TLR8-AS1 Gene

External Ids for TLR8-AS1 Gene

Previous GeneCards Identifiers for TLR8-AS1 Gene

  • GC0XM012922

Summaries for TLR8-AS1 Gene

GeneCards Summary for TLR8-AS1 Gene

TLR8-AS1 (TLR8 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TLR8-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TLR8-AS1 Gene

Genomics for TLR8-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TLR8-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TLR8-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TLR8-AS1 Gene

Latest Assembly
chrX:12,824,162-12,965,738
(GRCh38/hg38)
Size:
141,577 bases
Orientation:
Minus strand

Previous Assembly
chrX:12,920,936-12,961,419
(GRCh37/hg19 by Entrez Gene)
Size:
40,484 bases
Orientation:
Minus strand

chrX:12,920,936-12,926,452
(GRCh37/hg19 by Ensembl)
Size:
5,517 bases
Orientation:
Minus strand

Genomic View for TLR8-AS1 Gene

Genes around TLR8-AS1 on UCSC Golden Path with GeneCards custom track
TLR8-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TLR8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TLR8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TLR8-AS1 Gene

Proteins for TLR8-AS1 Gene

Post-translational modifications for TLR8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TLR8-AS1 Gene

Domains & Families for TLR8-AS1 Gene

Gene Families for TLR8-AS1 Gene

genes like me logo Genes that share domains with TLR8-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TLR8-AS1 Gene

Function for TLR8-AS1 Gene

Phenotypes From GWAS Catalog for TLR8-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TLR8-AS1 Gene

Localization for TLR8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TLR8-AS1 Gene

Pathways & Interactions for TLR8-AS1 Gene

PathCards logo

SuperPathways for TLR8-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TLR8-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TLR8-AS1 Gene

Drugs & Compounds for TLR8-AS1 Gene

No Compound Related Data Available

Transcripts for TLR8-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TLR8-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000039C1A2_9606 lncRNA 1349 2

Ensembl: ENST00000451564 (view in UCSC) ,

LNCipedia: TLR8-AS1:2,

URS000075D4A0_9606 lncRNA 1589 1

RefSeq: NR_030727,

URS00008B7E94_9606 lncRNA 1589 2

LNCipedia: TLR8-AS1:1,

NONCODE: NONHSAT136273.2,

URS0001BE20B7_9606 lncRNA 4778 1

LncBook: HSALNT0280241,

URS0001BCE2B7_9606 lncRNA 3865 1

LncBook: HSALNT0280231,

TLR8-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TLR8-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TLR8-AS1 Gene

No ASD Table

Relevant External Links for TLR8-AS1 Gene

GeneLoc Exon Structure for
TLR8-AS1

Expression for TLR8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TLR8-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TLR8-AS1 Gene

This gene is overexpressed in Whole Blood (x21.6) and Lung (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TLR8-AS1

SOURCE GeneReport for Unigene cluster for TLR8-AS1 Gene:

Hs.685035
genes like me logo Genes that share expression patterns with TLR8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TLR8-AS1 Gene

Orthologs for TLR8-AS1 Gene

Evolution for TLR8-AS1 Gene

ENSEMBL:
Gene Tree for TLR8-AS1 (if available)
TreeFam:
Gene Tree for TLR8-AS1 (if available)

No data available for Orthologs for TLR8-AS1 Gene

Paralogs for TLR8-AS1 Gene

No data available for Paralogs for TLR8-AS1 Gene

Variants for TLR8-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TLR8-AS1 Gene

SNP ID Clinical significance and condition Chr 0X pos Variation AA Info Type
rs151096932 Likely Benign: not provided 12,919,092(-) A/G
NM_138636.5(TLR8):c.52A>G (p.Ile18Val)
MISSENSE
rs1569113445 Association: Osteoarthritis 12,906,527(-) G/C
NM_138636.5(TLR8):c.-180G>C
rs1569113447 Association: Osteoarthritis 12,906,538(-) T/A
NM_138636.5(TLR8):c.-169T>A
rs370464823 Likely Benign: not provided 12,920,267(-) C/T
NM_138636.5(TLR8):c.1227C>T (p.Ile409=)
SYNONYMOUS
rs5744079 Benign: not provided 12,919,601(-) C/T
NM_138636.5(TLR8):c.561C>T (p.Cys187=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TLR8-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for TLR8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2223e212 CNV loss 25503493
esv3573586 CNV loss 25503493

Additional Variant Information for TLR8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TLR8-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TLR8-AS1 Gene

Disorders for TLR8-AS1 Gene

Additional Disease Information for TLR8-AS1

No disorders were found for TLR8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TLR8-AS1 Gene

Publications for TLR8-AS1 Gene

  1. LncRNA TLR8-AS1 promotes metastasis and chemoresistance of ovarian cancer through enhancing TLR8 mRNA stability. (PMID: 32278547) Xu Q … Liu J (Biochemical and biophysical research communications 2020) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for TLR8-AS1 Gene

Sources for TLR8-AS1 Gene