Aliases for TIPARP-AS1 Gene

Subcategory (RNA class) for TIPARP-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for TIPARP-AS1 Gene

  • TIPARP Antisense RNA 1 2 3 5
  • TIPARP Antisense RNA 1 (Non-Protein Coding) 2 3
  • TIPARP-AS1 2 168
  • NONHSAG036476 92
  • HSALNG0030062 167

External Ids for TIPARP-AS1 Gene

Previous GeneCards Identifiers for TIPARP-AS1 Gene

  • GC03M156392

Summaries for TIPARP-AS1 Gene

GeneCards Summary for TIPARP-AS1 Gene

TIPARP-AS1 (TIPARP Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TIPARP-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TIPARP-AS1 Gene

Genomics for TIPARP-AS1 Gene

GeneHancer (GH) Regulatory Elements for TIPARP-AS1 Gene

Promoters and enhancers for TIPARP-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TIPARP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TIPARP-AS1 Gene

Genomic Locations for TIPARP-AS1 Gene
chr3:156,669,434-156,675,879
(GRCh38/hg38)
Size:
6,446 bases
Orientation:
Minus strand
chr3:156,389,651-156,393,502
(GRCh37/hg19)
Size:
3,852 bases
Orientation:
Minus strand

Genomic View for TIPARP-AS1 Gene

Genes around TIPARP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TIPARP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TIPARP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TIPARP-AS1 Gene

Proteins for TIPARP-AS1 Gene

Post-translational modifications for TIPARP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TIPARP-AS1 Gene

Domains & Families for TIPARP-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TIPARP-AS1 Gene

Function for TIPARP-AS1 Gene

Phenotypes From GWAS Catalog for TIPARP-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TIPARP-AS1 Gene

Localization for TIPARP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TIPARP-AS1 Gene

Pathways & Interactions for TIPARP-AS1 Gene

PathCards logo

SuperPathways for TIPARP-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TIPARP-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TIPARP-AS1 Gene

Drugs & Compounds for TIPARP-AS1 Gene

No Compound Related Data Available

Transcripts for TIPARP-AS1 Gene

mRNA/cDNA for TIPARP-AS1 Gene

14 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
5 LncBook transcripts :
12 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TIPARP-AS1 Gene

No ASD Table

Relevant External Links for TIPARP-AS1 Gene

GeneLoc Exon Structure for
TIPARP-AS1

Expression for TIPARP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TIPARP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TIPARP-AS1 Gene

This gene is overexpressed in Testis (x18.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TIPARP-AS1

SOURCE GeneReport for Unigene cluster for TIPARP-AS1 Gene:

Hs.12813
genes like me logo Genes that share expression patterns with TIPARP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TIPARP-AS1 Gene

Orthologs for TIPARP-AS1 Gene

Evolution for TIPARP-AS1 Gene

ENSEMBL:
Gene Tree for TIPARP-AS1 (if available)
TreeFam:
Gene Tree for TIPARP-AS1 (if available)

No data available for Orthologs for TIPARP-AS1 Gene

Paralogs for TIPARP-AS1 Gene

No data available for Paralogs for TIPARP-AS1 Gene

Variants for TIPARP-AS1 Gene

Additional dbSNP identifiers (rs#s) for TIPARP-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TIPARP-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv954498 CNV duplication 24416366

Additional Variant Information for TIPARP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TIPARP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TIPARP-AS1 Gene

Disorders for TIPARP-AS1 Gene

Additional Disease Information for TIPARP-AS1

No disorders were found for TIPARP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TIPARP-AS1 Gene

Publications for TIPARP-AS1 Gene

  1. The aryl hydrocarbon receptor regulates the expression of TIPARP and its cis long non-coding RNA, TIPARP-AS1. (PMID: 29274782) Grimaldi G … Matthews J (Biochemical and biophysical research communications 2018) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for TIPARP-AS1 Gene

Sources for TIPARP-AS1 Gene