Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TIPARP-AS1 Gene

Subcategory (RNA class) for TIPARP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TIPARP-AS1 Gene

  • TIPARP Antisense RNA 1 2 3 5
  • TIPARP Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TIPARP-AS1 Gene

Previous GeneCards Identifiers for TIPARP-AS1 Gene

  • GC03M156392

Summaries for TIPARP-AS1 Gene

GeneCards Summary for TIPARP-AS1 Gene

TIPARP-AS1 (TIPARP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TIPARP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TIPARP-AS1 Gene

Genomics for TIPARP-AS1 Gene

GeneHancer (GH) Regulatory Elements for TIPARP-AS1 Gene

Promoters and enhancers for TIPARP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I156673 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 -4.8 -4798 14.4 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 TIPARP CCNL1 LINC00886 LEKR1 SSR3 TIPARP-AS1 PIR33904 METTL15P1
GH03I157085 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -413.0 -412980 6.2 HDGF PKNOX1 FOXA2 SMAD1 ARNT MLX ARID4B SIN3A FEZF1 DMAP1 LINC00881 CCNL1 TIPARP-AS1 TIPARP ENSG00000241770 KRT18P34 SSR3 KCNAB1-AS1 LINC02029 LINC00880
GH03I156760 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 17.8 -87.2 -87187 5.5 PKNOX1 FOXA2 ARNT IRF4 THRB RCOR1 BCLAF1 RUNX3 ZNF680 PRDM6 LINC00886 TIPARP-AS1 LEKR1 GC03P156804 METTL15P1
GH03I156604 Enhancer 1.2 Ensembl ENCODE 17.4 +69.6 69642 2.7 PKNOX1 ATF1 FOXA2 ARNT YY1 POLR2B ZNF766 FOS ATF7 KDM4B TIPARP-AS1 SSR3 TIPARP ENSG00000272990 GC03P156555
GH03I156748 Enhancer 1.1 Ensembl ENCODE dbSUPER 17.7 -75.2 -75248 4.9 SOX13 SUZ12 SAP130 RAD21 ZFHX2 GATA3 EGR1 RCOR1 FOS CHD2 TIPARP-AS1 LINC00886 METTL15P1 GC03P156804
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TIPARP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TIPARP-AS1 Gene

Genomic Locations for TIPARP-AS1 Gene
chr3:156,671,862-156,675,713
(GRCh38/hg38)
Size:
3,852 bases
Orientation:
Minus strand
chr3:156,389,651-156,393,502
(GRCh37/hg19)

Genomic View for TIPARP-AS1 Gene

Genes around TIPARP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TIPARP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TIPARP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TIPARP-AS1 Gene

Proteins for TIPARP-AS1 Gene

Post-translational modifications for TIPARP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TIPARP-AS1 Gene

Domains & Families for TIPARP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TIPARP-AS1 Gene

Function for TIPARP-AS1 Gene

Phenotypes From GWAS Catalog for TIPARP-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TIPARP-AS1 Gene

Localization for TIPARP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TIPARP-AS1 Gene

Pathways & Interactions for TIPARP-AS1 Gene

SuperPathways for TIPARP-AS1 Gene

No Data Available

Interacting Proteins for TIPARP-AS1 Gene

Gene Ontology (GO) - Biological Process for TIPARP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TIPARP-AS1 Gene

Drugs & Compounds for TIPARP-AS1 Gene

No Compound Related Data Available

Transcripts for TIPARP-AS1 Gene

mRNA/cDNA for TIPARP-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TIPARP-AS1 Gene

TIPARP antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TIPARP-AS1 Gene

No ASD Table

Relevant External Links for TIPARP-AS1 Gene

GeneLoc Exon Structure for
TIPARP-AS1
ECgene alternative splicing isoforms for
TIPARP-AS1

Expression for TIPARP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TIPARP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TIPARP-AS1 Gene

This gene is overexpressed in Testis (x18.3).

SOURCE GeneReport for Unigene cluster for TIPARP-AS1 Gene:

Hs.12813
genes like me logo Genes that share expression patterns with TIPARP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TIPARP-AS1 Gene

Orthologs for TIPARP-AS1 Gene

Evolution for TIPARP-AS1 Gene

ENSEMBL:
Gene Tree for TIPARP-AS1 (if available)
TreeFam:
Gene Tree for TIPARP-AS1 (if available)

No data available for Orthologs for TIPARP-AS1 Gene

Paralogs for TIPARP-AS1 Gene

No data available for Paralogs for TIPARP-AS1 Gene

Variants for TIPARP-AS1 Gene

Sequence variations from dbSNP and Humsavar for TIPARP-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000186877 -- 156,677,234(-) G/A upstream_transcript_variant
rs1000521073 -- 156,676,060(-) T/C upstream_transcript_variant
rs1000718605 -- 156,675,840(-) T/G upstream_transcript_variant
rs1000868420 -- 156,673,883(-) T/C non_coding_transcript_variant
rs1001237927 -- 156,674,698(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TIPARP-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv954498 CNV duplication 24416366

Additional Variant Information for TIPARP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TIPARP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TIPARP-AS1 Gene

Disorders for TIPARP-AS1 Gene

Additional Disease Information for TIPARP-AS1

No disorders were found for TIPARP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TIPARP-AS1 Gene

Publications for TIPARP-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. The aryl hydrocarbon receptor regulates the expression of TIPARP and its cis long non-coding RNA, TIPARP-AS1. (PMID: 29274782) Grimaldi G … Matthews J (Biochemical and biophysical research communications 2018) 3

Products for TIPARP-AS1 Gene

Sources for TIPARP-AS1 Gene

Content
Loading form....