Aliases for THAP9-AS1 Gene

Subcategory (RNA class) for THAP9-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for THAP9-AS1 Gene

  • THAP9 Antisense RNA 1 2 3 5
  • THAP9-AS1 2 5 165
  • THAP9 Antisense RNA 1 (Non-Protein Coding) 2 3
  • HSALNG0035549 164

External Ids for THAP9-AS1 Gene

Previous GeneCards Identifiers for THAP9-AS1 Gene

  • GC04M083816

Summaries for THAP9-AS1 Gene

GeneCards Summary for THAP9-AS1 Gene

THAP9-AS1 (THAP9 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for THAP9-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for THAP9-AS1 Gene

Genomics for THAP9-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for THAP9-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around THAP9-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for THAP9-AS1 Gene

Genomic Locations for THAP9-AS1 Gene
chr4:82,877,489-82,900,960
(GRCh38/hg38)
Size:
23,472 bases
Orientation:
Minus strand
chr4:83,814,162-83,822,113
(GRCh37/hg19)
Size:
7,952 bases
Orientation:
Minus strand

Genomic View for THAP9-AS1 Gene

Genes around THAP9-AS1 on UCSC Golden Path with GeneCards custom track
THAP9-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
THAP9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THAP9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP9-AS1 Gene

Proteins for THAP9-AS1 Gene

Post-translational modifications for THAP9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP9-AS1 Gene

Domains & Families for THAP9-AS1 Gene

Gene Families for THAP9-AS1 Gene

genes like me logo Genes that share domains with THAP9-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for THAP9-AS1 Gene

Function for THAP9-AS1 Gene

Phenotypes From GWAS Catalog for THAP9-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THAP9-AS1 Gene

Localization for THAP9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for THAP9-AS1 Gene

Pathways & Interactions for THAP9-AS1 Gene

PathCards logo

SuperPathways for THAP9-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for THAP9-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for THAP9-AS1 Gene

Drugs & Compounds for THAP9-AS1 Gene

No Compound Related Data Available

Transcripts for THAP9-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for THAP9-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002339D2_9606 lncRNA 2770 3

Ensembl: ENST00000504520 (view in UCSC) ,

LncBook: HSALNT0074391,

LNCipedia: THAP9-AS1:2,

URS000036E264_9606 lncRNA 683 3

Ensembl: ENST00000513581 (view in UCSC) ,

LncBook: HSALNT0074403,

LNCipedia: THAP9-AS1:35, THAP9-AS1:8,

URS00003FA6B2_9606 lncRNA 573 3

Ensembl: ENST00000504718 (view in UCSC) ,

LncBook: HSALNT0074404,

LNCipedia: THAP9-AS1:19,

URS000026B7AD_9606 lncRNA 566 3

Ensembl: ENST00000508772 (view in UCSC) ,

LncBook: HSALNT0074401,

LNCipedia: THAP9-AS1:10, THAP9-AS1:34,

URS00004E2415_9606 lncRNA 552 3

Ensembl: ENST00000505028 (view in UCSC) ,

LncBook: HSALNT0074405,

LNCipedia: THAP9-AS1:36, THAP9-AS1:9,

THAP9-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for THAP9-AS1 Gene

13 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for THAP9-AS1 Gene

No ASD Table

Relevant External Links for THAP9-AS1 Gene

GeneLoc Exon Structure for
THAP9-AS1

Expression for THAP9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for THAP9-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for THAP9-AS1

SOURCE GeneReport for Unigene cluster for THAP9-AS1 Gene:

Hs.728916
genes like me logo Genes that share expression patterns with THAP9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for THAP9-AS1 Gene

Orthologs for THAP9-AS1 Gene

Evolution for THAP9-AS1 Gene

ENSEMBL:
Gene Tree for THAP9-AS1 (if available)
TreeFam:
Gene Tree for THAP9-AS1 (if available)

No data available for Orthologs for THAP9-AS1 Gene

Paralogs for THAP9-AS1 Gene

No data available for Paralogs for THAP9-AS1 Gene

Variants for THAP9-AS1 Gene

Additional dbSNP identifiers (rs#s) for THAP9-AS1 Gene

Additional Variant Information for THAP9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THAP9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for THAP9-AS1 Gene

Disorders for THAP9-AS1 Gene

No disorders were found for THAP9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THAP9-AS1 Gene

Publications for THAP9-AS1 Gene

  1. lncRNA THAP9-AS1 Promotes Pancreatic Ductal Adenocarcinoma Growth and Leads to a Poor Clinical Outcome via Sponging miR-484 and Interacting with YAP. (PMID: 31831555) Li N … Zheng G (Clinical cancer research : an official journal of the American Association for Cancer Research 2020) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  5. Regional localization of 10 mariner transposon-like ESTs by means of FISH--evidence for a correlation with fragile sites. (PMID: 11309667) Liehr T … Rautenstrauss B (Mammalian genome : official journal of the International Mammalian Genome Society 2001) 3

Products for THAP9-AS1 Gene

Sources for THAP9-AS1 Gene