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Aliases for THAP9-AS1 Gene

Subcategory (RNA class) for THAP9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THAP9-AS1 Gene

  • THAP9 Antisense RNA 1 2 3 5
  • THAP9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for THAP9-AS1 Gene

Previous GeneCards Identifiers for THAP9-AS1 Gene

  • GC04M083816

Summaries for THAP9-AS1 Gene

GeneCards Summary for THAP9-AS1 Gene

THAP9-AS1 (THAP9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for THAP9-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THAP9-AS1 Gene

Genomics for THAP9-AS1 Gene

GeneHancer (GH) Regulatory Elements for THAP9-AS1 Gene

Promoters and enhancers for THAP9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I082898 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 599.3 +0.5 547 4.6 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 THAP9-AS1 GC04P082899 SEC31A THAP9 HNRNPD HELQ ABRAXAS1
GH04I082796 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 42.3 +103.0 103032 3.2 SMAD1 FEZF1 GLIS2 ZNF214 SP3 ZNF662 ZNF491 ZSCAN16 GLIS1 ZNF624 SCD5 HNRNPDL THAP9-AS1 LOC101928963 HNRNPD SEC31A ENSG00000270842
GH04I083009 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 39.4 -110.9 -110857 5.3 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 LIN54 HNRNPD THAP9-AS1 HELQ SEC31A ABRAXAS1 RNU6-615P
GH04I082888 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 24.1 +9.9 9887 4.9 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 SEC31A THAP9-AS1 HNRNPD MRPS18C GC04P082899 GC04M082849
GH04I082370 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 19.9 +527.5 527491 5.1 CLOCK MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC HNRNPD LOC101928963 HNRNPDL THAP9-AS1 SEC31A ENOPH1 TMEM150C PIR50483
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for THAP9-AS1 Gene

Genomic Locations for THAP9-AS1 Gene
chr4:82,893,009-82,900,960
(GRCh38/hg38)
Size:
7,952 bases
Orientation:
Minus strand
chr4:83,814,162-83,822,113
(GRCh37/hg19)

Genomic View for THAP9-AS1 Gene

Genes around THAP9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THAP9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THAP9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP9-AS1 Gene

Proteins for THAP9-AS1 Gene

Post-translational modifications for THAP9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP9-AS1 Gene

Domains & Families for THAP9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THAP9-AS1 Gene

Function for THAP9-AS1 Gene

Phenotypes From GWAS Catalog for THAP9-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THAP9-AS1 Gene

Localization for THAP9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for THAP9-AS1 Gene

Pathways & Interactions for THAP9-AS1 Gene

SuperPathways for THAP9-AS1 Gene

No Data Available

Interacting Proteins for THAP9-AS1 Gene

Gene Ontology (GO) - Biological Process for THAP9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THAP9-AS1 Gene

Drugs & Compounds for THAP9-AS1 Gene

No Compound Related Data Available

Transcripts for THAP9-AS1 Gene

mRNA/cDNA for THAP9-AS1 Gene

(6) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for THAP9-AS1 Gene

THAP9 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for THAP9-AS1 Gene

No ASD Table

Relevant External Links for THAP9-AS1 Gene

GeneLoc Exon Structure for
THAP9-AS1
ECgene alternative splicing isoforms for
THAP9-AS1

Expression for THAP9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for THAP9-AS1 Gene

SOURCE GeneReport for Unigene cluster for THAP9-AS1 Gene:

Hs.728916
genes like me logo Genes that share expression patterns with THAP9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for THAP9-AS1 Gene

Orthologs for THAP9-AS1 Gene

Evolution for THAP9-AS1 Gene

ENSEMBL:
Gene Tree for THAP9-AS1 (if available)
TreeFam:
Gene Tree for THAP9-AS1 (if available)

No data available for Orthologs for THAP9-AS1 Gene

Paralogs for THAP9-AS1 Gene

No data available for Paralogs for THAP9-AS1 Gene

Variants for THAP9-AS1 Gene

Sequence variations from dbSNP and Humsavar for THAP9-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000019032 -- 82,900,290(-) T/C intron_variant
rs1000154176 -- 82,899,867(-) A/C intron_variant
rs1000268128 -- 82,893,711(-) AGGAG/AG non_coding_transcript_variant
rs1000424435 -- 82,897,477(-) G/A intron_variant
rs1000815276 -- 82,895,706(-) C/A non_coding_transcript_variant

Additional Variant Information for THAP9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THAP9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for THAP9-AS1 Gene

Disorders for THAP9-AS1 Gene

Additional Disease Information for THAP9-AS1

No disorders were found for THAP9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THAP9-AS1 Gene

Publications for THAP9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Regional localization of 10 mariner transposon-like ESTs by means of FISH--evidence for a correlation with fragile sites. (PMID: 11309667) Liehr T … Rautenstrauss B (Mammalian genome : official journal of the International Mammalian Genome Society 2001) 3 58
  5. Molecular evolution of the second ancient human mariner transposon, Hsmar2, illustrates patterns of neutral evolution in the human genome lineage. (PMID: 9461396) Robertson HM … Martos R (Gene 1997) 3 58

Products for THAP9-AS1 Gene

Sources for THAP9-AS1 Gene

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