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Aliases for THAP7-AS1 Gene

Subcategory (RNA class) for THAP7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for THAP7-AS1 Gene

  • THAP7 Antisense RNA 1 2 3 5
  • THAP7 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for THAP7-AS1 Gene

Previous GeneCards Identifiers for THAP7-AS1 Gene

  • GC22P021358
  • GC22P021448

Summaries for THAP7-AS1 Gene

GeneCards Summary for THAP7-AS1 Gene

THAP7-AS1 (THAP7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for THAP7-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for THAP7-AS1 Gene

Genomics for THAP7-AS1 Gene

GeneHancer (GH) Regulatory Elements for THAP7-AS1 Gene

Promoters and enhancers for THAP7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I021000 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 619.6 +0.2 197 4.5 HDGF PKNOX1 CLOCK SMAD1 FOXA2 ZFP64 ARID4B SIN3A FEZF1 DMAP1 THAP7-AS1 PIR35374 THAP7 GC22M021007 GC22M021006 LZTR1 RANBP1 ABHD17AP4 P2RX6 PIR41411
GH22I020494 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 38.6 -506.0 -506043 2.7 CLOCK FEZF1 YBX1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 MED15 KLHL22 LOC101928824 LZTR1 DGCR8 RPL7AP70 TRMT2A RPL8P5 LOC100420177 THAP7
GH22I020978 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 36.3 -20.3 -20322 5.3 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 LZTR1 ENSG00000272829 THAP7-AS1 LOC100420177 PI4KAP2 THAP7 TRMT2A ZDHHC8 ABHD17AP4 ENSG00000273342
GH22I021936 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 23.1 +942.9 942861 17.5 HDGF PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 PPM1F ENSG00000224086 TOP3BP1 TOP3B LZTR1 IGLV5-52 PPIL2 ENSG00000234630 ENSG00000272779 THAP7
GH22I020548 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 28.8 -448.0 -447972 10.5 HDGF HNRNPUL1 PKNOX1 FOXA2 MLX ARNT ARID4B YBX1 FEZF1 YY1 MED15 LZTR1 DGCR8 TRMT2A LOC100420177 THAP7-AS1 KLHL22 THAP7 RPL7AP70 ZDHHC8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around THAP7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for THAP7-AS1 Gene

Genomic Locations for THAP7-AS1 Gene
chr22:21,001,886-21,010,374
(GRCh38/hg38)
Size:
8,489 bases
Orientation:
Plus strand
chr22:21,356,175-21,364,663
(GRCh37/hg19)

Genomic View for THAP7-AS1 Gene

Genes around THAP7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
THAP7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THAP7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP7-AS1 Gene

Proteins for THAP7-AS1 Gene

Post-translational modifications for THAP7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP7-AS1 Gene

Domains & Families for THAP7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for THAP7-AS1 Gene

Function for THAP7-AS1 Gene

Phenotypes From GWAS Catalog for THAP7-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THAP7-AS1 Gene

Localization for THAP7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for THAP7-AS1 Gene

Pathways & Interactions for THAP7-AS1 Gene

SuperPathways for THAP7-AS1 Gene

No Data Available

Interacting Proteins for THAP7-AS1 Gene

Gene Ontology (GO) - Biological Process for THAP7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for THAP7-AS1 Gene

Drugs & Compounds for THAP7-AS1 Gene

No Compound Related Data Available

Transcripts for THAP7-AS1 Gene

Unigene Clusters for THAP7-AS1 Gene

THAP7 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for THAP7-AS1 Gene

No ASD Table

Relevant External Links for THAP7-AS1 Gene

GeneLoc Exon Structure for
THAP7-AS1
ECgene alternative splicing isoforms for
THAP7-AS1

Expression for THAP7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for THAP7-AS1 Gene

SOURCE GeneReport for Unigene cluster for THAP7-AS1 Gene:

Hs.517430
genes like me logo Genes that share expression patterns with THAP7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for THAP7-AS1 Gene

Orthologs for THAP7-AS1 Gene

Evolution for THAP7-AS1 Gene

ENSEMBL:
Gene Tree for THAP7-AS1 (if available)
TreeFam:
Gene Tree for THAP7-AS1 (if available)

No data available for Orthologs for THAP7-AS1 Gene

Paralogs for THAP7-AS1 Gene

No data available for Paralogs for THAP7-AS1 Gene

Variants for THAP7-AS1 Gene

Sequence variations from dbSNP and Humsavar for THAP7-AS1 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000190752 -- 21,004,163(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000227427 -- 21,009,343(+) C/T genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000261275 -- 21,006,637(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000361993 -- 21,001,756(+) C/T upstream_transcript_variant
rs1000564618 -- 21,010,512(+) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for THAP7-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4483n100 CNV gain 25217958
dgv7993n54 CNV gain 21841781
dgv7994n54 CNV gain 21841781
esv2678175 CNV deletion 23128226
esv2763693 CNV gain 21179565
esv3647304 CNV loss 21293372
esv3647305 CNV gain 21293372
esv3647307 CNV loss 21293372
esv3647308 CNV loss 21293372
esv3893441 CNV gain+loss 25118596
nsv1056614 CNV loss 25217958
nsv1062280 CNV gain 25217958
nsv1065617 CNV gain 25217958
nsv436864 CNV insertion 17901297
nsv471185 CNV loss 18288195
nsv482071 CNV gain 20164927
nsv523162 CNV loss 19592680
nsv588305 CNV loss 21841781
nsv588306 CNV gain 21841781
nsv828960 CNV loss 20364138
nsv828961 CNV gain 20364138
nsv834141 CNV loss 17160897
nsv834142 CNV gain 17160897
nsv964590 CNV duplication 23825009

Additional Variant Information for THAP7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THAP7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for THAP7-AS1 Gene

Disorders for THAP7-AS1 Gene

Additional Disease Information for THAP7-AS1

No disorders were found for THAP7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THAP7-AS1 Gene

Publications for THAP7-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for THAP7-AS1 Gene

Sources for THAP7-AS1 Gene

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