Aliases for THAP7-AS1 Gene

Data sources for THAP7-AS1 Gene:

Subcategory (RNA class) for THAP7-AS1 Gene

lncRNA

Aliases for THAP7-AS1 Gene

External Ids for THAP7-AS1 Gene

Previous GeneCards Identifiers for THAP7-AS1 Gene

  • GC22P021358
  • GC22P021448

Summaries for THAP7-AS1 Gene

GeneCards Summary for THAP7-AS1 Gene

THAP7-AS1 (THAP7 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for THAP7-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for THAP7-AS1 Gene

Genomics for THAP7-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for THAP7-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around THAP7-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for THAP7-AS1 Gene

Latest Assembly
chr22:21,001,875-21,010,374
(GRCh38/hg38)
Size:
8,500 bases
Orientation:
Plus strand

Previous Assembly
chr22:21,356,211-21,364,663
(GRCh37/hg19 by Entrez Gene)
Size:
8,453 bases
Orientation:
Plus strand

chr22:21,356,175-21,364,631
(GRCh37/hg19 by Ensembl)
Size:
8,457 bases
Orientation:
Plus strand

Genomic View for THAP7-AS1 Gene

Genes around THAP7-AS1 on UCSC Golden Path with GeneCards custom track
THAP7-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
THAP7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for THAP7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for THAP7-AS1 Gene

Proteins for THAP7-AS1 Gene

Post-translational modifications for THAP7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for THAP7-AS1 Gene

Domains & Families for THAP7-AS1 Gene

Gene Families for THAP7-AS1 Gene

genes like me logo Genes that share domains with THAP7-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for THAP7-AS1 Gene

Function for THAP7-AS1 Gene

Phenotypes From GWAS Catalog for THAP7-AS1 Gene

Phenotypes for THAP7-AS1 Gene

GenomeRNAi human phenotypes for THAP7-AS1:
genes like me logo Genes that share phenotypes with THAP7-AS1: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for THAP7-AS1 Gene

Localization for THAP7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for THAP7-AS1 Gene

Pathways & Interactions for THAP7-AS1 Gene

PathCards logo

SuperPathways for THAP7-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for THAP7-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for THAP7-AS1 Gene

Drugs & Compounds for THAP7-AS1 Gene

No Compound Related Data Available

Transcripts for THAP7-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for THAP7-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000046B116_9606 lncRNA 2300 2

Ensembl: ENST00000452284 (view in UCSC) ,

LNCipedia: THAP7-AS1:4,

URS000001CE73_9606 lncRNA 1265 2

Ensembl: ENST00000429962 (view in UCSC) ,

LNCipedia: THAP7-AS1:2,

URS000075A05E_9606 lncRNA 2616 1

RefSeq: NR_027051,

URS0000584737_9606 lncRNA 1720 1

Ensembl: ENST00000436079 (view in UCSC) ,

URS000075AD0D_9606 lncRNA 1263 1

RefSeq: NR_027052,

THAP7-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for THAP7-AS1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for THAP7-AS1 Gene

No ASD Table

Relevant External Links for THAP7-AS1 Gene

GeneLoc Exon Structure for
THAP7-AS1

Expression for THAP7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for THAP7-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for THAP7-AS1

SOURCE GeneReport for Unigene cluster for THAP7-AS1 Gene:

Hs.517430
genes like me logo Genes that share expression patterns with THAP7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for THAP7-AS1 Gene

Orthologs for THAP7-AS1 Gene

Evolution for THAP7-AS1 Gene

ENSEMBL:
Gene Tree for THAP7-AS1 (if available)
TreeFam:
Gene Tree for THAP7-AS1 (if available)

No data available for Orthologs for THAP7-AS1 Gene

Paralogs for THAP7-AS1 Gene

No data available for Paralogs for THAP7-AS1 Gene

Variants for THAP7-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for THAP7-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for THAP7-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4483n100 CNV gain 25217958
dgv7993n54 CNV gain 21841781
dgv7994n54 CNV gain 21841781
esv2678175 CNV deletion 23128226
esv2763693 CNV gain 21179565
esv3647304 CNV loss 21293372
esv3647305 CNV gain 21293372
esv3647307 CNV loss 21293372
esv3647308 CNV loss 21293372
esv3893441 CNV gain+loss 25118596
nsv1056614 CNV loss 25217958
nsv1062280 CNV gain 25217958
nsv1065617 CNV gain 25217958
nsv436864 CNV insertion 17901297
nsv471185 CNV loss 18288195
nsv482071 CNV gain 20164927
nsv523162 CNV loss 19592680
nsv588305 CNV loss 21841781
nsv588306 CNV gain 21841781
nsv828960 CNV loss 20364138
nsv828961 CNV gain 20364138
nsv834141 CNV loss 17160897
nsv834142 CNV gain 17160897
nsv964590 CNV duplication 23825009

Additional Variant Information for THAP7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
THAP7-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for THAP7-AS1 Gene

Disorders for THAP7-AS1 Gene

Additional Disease Information for THAP7-AS1

No disorders were found for THAP7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for THAP7-AS1 Gene

Publications for THAP7-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for THAP7-AS1 Gene

Sources for THAP7-AS1 Gene