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Aliases for TH2LCRR Gene

Subcategory (RNA class) for TH2LCRR Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TH2LCRR Gene

  • T Helper Type 2 Locus Control Region Associated RNA 2 3 5
  • TH2-LCR 3

External Ids for TH2LCRR Gene

Summaries for TH2LCRR Gene

GeneCards Summary for TH2LCRR Gene

TH2LCRR (T Helper Type 2 Locus Control Region Associated RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with TH2LCRR include Nijmegen Breakage Syndrome-Like Disorder.

Additional gene information for TH2LCRR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TH2LCRR Gene

Genomics for TH2LCRR Gene

GeneHancer (GH) Regulatory Elements for TH2LCRR Gene

Promoters and enhancers for TH2LCRR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J132662 Enhancer 1.4 FANTOM5 Ensembl ENCODE 650.7 +0.3 265 2.4 HDGF PKNOX1 ATF1 FOXA2 SMAD1 ARID4B YBX1 IRF4 ZNF48 ZNF766 GC05M132664 TH2LCRR RAD50 AFF4 IL4 ENSG00000224431 ZCCHC10 ENSG00000248648 IL13 CCNI2
GH05J132666 Enhancer 0.4 ENCODE 650.7 -1.8 -1760 0.1 IKZF1 CEBPB ZBTB33 GC05M132664 TH2LCRR IL4
GH05J132770 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 11.1 -110.2 -110231 7.9 HDGF PKNOX1 ARID4B SIN3A ZBTB7B YY1 ZNF766 ZNF143 ZNF263 SP3 SEPT8 GC05M132776 GC05M132777 IL4 ENSG00000202533 LOC105379175 CCNI2 KIF3A SOWAHA AFF4
GH05J132736 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.1 -73.5 -73507 2.6 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 BRCA1 ZNF48 YY1 POLR2B KIF3A SEPT8 ENSG00000230612 IL4 TH2LCRR IL13 SHROOM1 IL5 RAD50 RNU7-15P
GH05J132812 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 10.8 -151.3 -151331 5.4 BMI1 KLF14 YY1 ZNF335 GLIS2 KLF13 EGR2 ZNF202 ZNF362 CEBPB IL4 GDF9 RAD50 AFF4 RNU7-15P RNA5SP192 CCNI2 UQCRQ KIF3A ZCCHC10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TH2LCRR on UCSC Golden Path with GeneCards custom track

Genomic Locations for TH2LCRR Gene

Genomic Locations for TH2LCRR Gene
chr5:132,630,589-132,664,272
(GRCh38/hg38)
Size:
33,684 bases
Orientation:
Minus strand
chr5:131,966,281-131,999,964
(GRCh37/hg19)
Size:
33,684 bases
Orientation:
Minus strand

Genomic View for TH2LCRR Gene

Genes around TH2LCRR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TH2LCRR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TH2LCRR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TH2LCRR Gene

Proteins for TH2LCRR Gene

Post-translational modifications for TH2LCRR Gene

No Post-translational modifications

No data available for DME Specific Peptides for TH2LCRR Gene

Domains & Families for TH2LCRR Gene

Gene Families for TH2LCRR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TH2LCRR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TH2LCRR Gene

Function for TH2LCRR Gene

Phenotypes From GWAS Catalog for TH2LCRR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TH2LCRR Gene

Localization for TH2LCRR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TH2LCRR Gene

Pathways & Interactions for TH2LCRR Gene

SuperPathways for TH2LCRR Gene

No Data Available

Interacting Proteins for TH2LCRR Gene

Gene Ontology (GO) - Biological Process for TH2LCRR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TH2LCRR Gene

Drugs & Compounds for TH2LCRR Gene

No Compound Related Data Available

Transcripts for TH2LCRR Gene

mRNA/cDNA for TH2LCRR Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TH2LCRR Gene

No ASD Table

Relevant External Links for TH2LCRR Gene

GeneLoc Exon Structure for
TH2LCRR
ECgene alternative splicing isoforms for
TH2LCRR

Expression for TH2LCRR Gene

NURSA nuclear receptor signaling pathways regulating expression of TH2LCRR Gene:

TH2LCRR
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TH2LCRR Gene

Orthologs for TH2LCRR Gene

Evolution for TH2LCRR Gene

ENSEMBL:
Gene Tree for TH2LCRR (if available)
TreeFam:
Gene Tree for TH2LCRR (if available)

No data available for Orthologs for TH2LCRR Gene

Paralogs for TH2LCRR Gene

No data available for Paralogs for TH2LCRR Gene

Variants for TH2LCRR Gene

Sequence variations from dbSNP and Humsavar for TH2LCRR Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1060501933 likely-pathogenic, Hereditary cancer-predisposing syndrome 132,642,195(-) C/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1060501944 uncertain-significance, Hereditary cancer-predisposing syndrome 132,640,678(-) G/A/C intron_variant
rs1060501965 uncertain-significance, Hereditary cancer-predisposing syndrome 132,640,802(-) T/C intron_variant
rs1060501971 uncertain-significance, Hereditary cancer-predisposing syndrome 132,642,222(-) T/G genic_upstream_transcript_variant, intron_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1060501977 uncertain-significance, Hereditary cancer-predisposing syndrome 132,640,682(-) C/T intron_variant

Additional Variant Information for TH2LCRR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TH2LCRR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TH2LCRR Gene

Disorders for TH2LCRR Gene

MalaCards: The human disease database

(1) MalaCards diseases for TH2LCRR Gene - From: GeneCards

Disorder Aliases PubMed IDs
nijmegen breakage syndrome-like disorder
  • nbsld
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TH2LCRR

genes like me logo Genes that share disorders with TH2LCRR: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TH2LCRR Gene

Publications for TH2LCRR Gene

  1. Expression and functions of long noncoding RNAs during human T helper cell differentiation. (PMID: 25903499) Spurlock CF … Aune TM (Nature communications 2015) 2 3 58

Products for TH2LCRR Gene

Sources for TH2LCRR Gene

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