Aliases for TGFB2-AS1 Gene

Subcategory (RNA class) for TGFB2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TGFB2-AS1 Gene

  • TGFB2 Antisense RNA 1 (Head To Head) 2 3 5
  • TGFB2-AS1 2 5 165
  • NONHSAG004303.2 91
  • HSALNG0010602 164
  • NR_046268 2

External Ids for TGFB2-AS1 Gene

Summaries for TGFB2-AS1 Gene

GeneCards Summary for TGFB2-AS1 Gene

TGFB2-AS1 (TGFB2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TGFB2-AS1 include Loeys-Dietz Syndrome 4 and Loeys-Dietz Syndrome.

Additional gene information for TGFB2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TGFB2-AS1 Gene

Genomics for TGFB2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TGFB2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TGFB2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TGFB2-AS1 Gene

Genomic Locations for TGFB2-AS1 Gene
chr1:218,344,160-218,346,319
(GRCh38/hg38)
Size:
2,160 bases
Orientation:
Minus strand
chr1:218,517,538-218,519,020
(GRCh37/hg19)
Size:
1,483 bases
Orientation:
Minus strand

Genomic View for TGFB2-AS1 Gene

Genes around TGFB2-AS1 on UCSC Golden Path with GeneCards custom track
TGFB2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TGFB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TGFB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TGFB2-AS1 Gene

Proteins for TGFB2-AS1 Gene

Post-translational modifications for TGFB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TGFB2-AS1 Gene

Domains & Families for TGFB2-AS1 Gene

Gene Families for TGFB2-AS1 Gene

genes like me logo Genes that share domains with TGFB2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TGFB2-AS1 Gene

Function for TGFB2-AS1 Gene

Phenotypes From GWAS Catalog for TGFB2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TGFB2-AS1 Gene

Localization for TGFB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TGFB2-AS1 Gene

Pathways & Interactions for TGFB2-AS1 Gene

PathCards logo

SuperPathways for TGFB2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TGFB2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TGFB2-AS1 Gene

Drugs & Compounds for TGFB2-AS1 Gene

No Compound Related Data Available

Transcripts for TGFB2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TGFB2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000126BEF_9606 lncRNA 557 5

HGNC: 50628,

RefSeq: NR_046268,

Ensembl: ENST00000414452 (view in UCSC) ,

LNCipedia: TGFB2-AS1:2,

NONCODE: NONHSAT009517.2,

URS00008B333B_9606 lncRNA 1813 2

LNCipedia: TGFB2-AS1:1,

NONCODE: NONHSAT009518.2,

URS00009BDDCD_9606 lncRNA 1237 2

LncBook: HSALNT0021974,

NONCODE: NONHSAT152954.1,

URS00009C4675_9606 lncRNA 557 2

LncBook: HSALNT0021972,

NONCODE: NONHSAT152953.1,

URS0000D5AD22_9606 lncRNA 529 2

LncBook: HSALNT0021976,

LNCipedia: TGFB2-AS1:3,

TGFB2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TGFB2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TGFB2-AS1 Gene

No ASD Table

Relevant External Links for TGFB2-AS1 Gene

GeneLoc Exon Structure for
TGFB2-AS1

Expression for TGFB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TGFB2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TGFB2-AS1

genes like me logo Genes that share expression patterns with TGFB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TGFB2-AS1 Gene

Orthologs for TGFB2-AS1 Gene

Evolution for TGFB2-AS1 Gene

ENSEMBL:
Gene Tree for TGFB2-AS1 (if available)
TreeFam:
Gene Tree for TGFB2-AS1 (if available)

No data available for Orthologs for TGFB2-AS1 Gene

Paralogs for TGFB2-AS1 Gene

No data available for Paralogs for TGFB2-AS1 Gene

Variants for TGFB2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TGFB2-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
675714 Benign/Likely Benign: Loeys-Dietz syndrome 4; not provided 218,345,472(-) G/A NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT
875513 Uncertain Significance: Loeys-Dietz syndrome 4 218,345,453(-) G/A NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT
875514 Uncertain Significance: Loeys-Dietz syndrome 4 218,345,465(-) G/C NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT
rs10482718 Benign/Likely Benign: Loeys-Dietz syndrome 4; not provided 218,345,400(-) A/G NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT
rs886045957 Uncertain Significance: Loeys-Dietz syndrome 218,345,420(-) T/TAGAAAG NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for TGFB2-AS1 Gene

Additional Variant Information for TGFB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TGFB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TGFB2-AS1 Gene

Disorders for TGFB2-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for TGFB2-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
loeys-dietz syndrome 4
  • lds4
loeys-dietz syndrome
  • furlong syndrome
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with TGFB2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TGFB2-AS1 Gene

Publications for TGFB2-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3
  2. The TGFB2-AS1 lncRNA Regulates TGF-β Signaling by Modulating Corepressor Activity. (PMID: 31533040) Papoutsoglou P … Moustakas A (Cell reports 2019) 3

Products for TGFB2-AS1 Gene

Sources for TGFB2-AS1 Gene