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Aliases for TGFA-IT1 Gene

Subcategory (RNA class) for TGFA-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TGFA-IT1 Gene

  • TGFA Intronic Transcript 1 2 3 5
  • TGFA Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TGFA-IT1 Gene

Previous GeneCards Identifiers for TGFA-IT1 Gene

  • GC00U933038
  • GC02M070695

Summaries for TGFA-IT1 Gene

GeneCards Summary for TGFA-IT1 Gene

TGFA-IT1 (TGFA Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TGFA-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TGFA-IT1 Gene

Genomics for TGFA-IT1 Gene

GeneHancer (GH) Regulatory Elements for TGFA-IT1 Gene

Promoters and enhancers for TGFA-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I070551 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.2 -71.7 -71715 4.1 FOXA2 ARID4B SIN3A DMAP1 ZBTB7B ZNF48 YY1 GLIS2 ZNF143 SP3 TGFA CLEC4F TIA1 TEX261 PCBP1-AS1 CD207 VAX2 TGFA-IT1
GH02I070522 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -43.2 -43166 4 ELF3 PKNOX1 FOXA2 SIN3A RAD21 DNMT3B RFX5 SCRT2 RCOR1 ATF7 TGFA ADD2 ASPRV1 TGFA-IT1
GH02I070513 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -33.9 -33879 4 PKNOX1 NFIB SIN3A ZNF195 BATF RAD21 SCRT2 FOS EGR2 RXRA TGFA ASPRV1 TGFA-IT1
GH02I070509 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.3 -28.6 -28640 1.3 SMARCE1 CTCF GATA3 KLF4 ZBTB20 TCF7L2 CD207 TGFA ASPRV1 FIGLA TGFA-IT1
GH02I070540 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 -60.1 -60076 2.2 CTCF RNF2 JUND ZNF316 ZNF629 PRDM10 ZNF600 FOS PRDM1 ZBTB17 ADD2 TGFA TGFA-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TGFA-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TGFA-IT1 Gene

Genomic Locations for TGFA-IT1 Gene
chr2:70,467,385-70,481,640
(GRCh38/hg38)
Size:
14,256 bases
Orientation:
Minus strand
chr2:70,694,517-70,695,627
(GRCh37/hg19)

Genomic View for TGFA-IT1 Gene

Genes around TGFA-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TGFA-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TGFA-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TGFA-IT1 Gene

Proteins for TGFA-IT1 Gene

Post-translational modifications for TGFA-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TGFA-IT1 Gene

Domains & Families for TGFA-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TGFA-IT1 Gene

Function for TGFA-IT1 Gene

Phenotypes From GWAS Catalog for TGFA-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TGFA-IT1 Gene

Localization for TGFA-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TGFA-IT1 Gene

Pathways & Interactions for TGFA-IT1 Gene

SuperPathways for TGFA-IT1 Gene

No Data Available

Interacting Proteins for TGFA-IT1 Gene

Gene Ontology (GO) - Biological Process for TGFA-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TGFA-IT1 Gene

Drugs & Compounds for TGFA-IT1 Gene

No Compound Related Data Available

Transcripts for TGFA-IT1 Gene

mRNA/cDNA for TGFA-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TGFA-IT1 Gene

No ASD Table

Relevant External Links for TGFA-IT1 Gene

GeneLoc Exon Structure for
TGFA-IT1
ECgene alternative splicing isoforms for
TGFA-IT1

Expression for TGFA-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TGFA-IT1 Gene

genes like me logo Genes that share expression patterns with TGFA-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TGFA-IT1 Gene

Orthologs for TGFA-IT1 Gene

Evolution for TGFA-IT1 Gene

ENSEMBL:
Gene Tree for TGFA-IT1 (if available)
TreeFam:
Gene Tree for TGFA-IT1 (if available)

No data available for Orthologs for TGFA-IT1 Gene

Paralogs for TGFA-IT1 Gene

No data available for Paralogs for TGFA-IT1 Gene

Variants for TGFA-IT1 Gene

Sequence variations from dbSNP and Humsavar for TGFA-IT1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1001546605 -- 70,475,020(-) T/C intron_variant
rs1001547460 -- 70,478,465(-) C/T intron_variant
rs1001829100 -- 70,480,209(-) T/C intron_variant
rs1002165687 -- 70,473,549(-) G/T intron_variant
rs1002204612 -- 70,468,325(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TGFA-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv834255 CNV gain 17160897

Additional Variant Information for TGFA-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TGFA-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TGFA-IT1 Gene

Disorders for TGFA-IT1 Gene

Additional Disease Information for TGFA-IT1

No disorders were found for TGFA-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TGFA-IT1 Gene

Publications for TGFA-IT1 Gene

  1. Common variants at 1p36 are associated with superior frontal gyrus volume. (PMID: 25335168) Hashimoto R … Ozaki N (Translational psychiatry 2014) 3 58
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58

Products for TGFA-IT1 Gene

Sources for TGFA-IT1 Gene

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