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Aliases for TFAP2A-AS1 Gene

Subcategory (RNA class) for TFAP2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TFAP2A-AS1 Gene

  • TFAP2A Antisense RNA 1 2 3 5

External Ids for TFAP2A-AS1 Gene

Previous GeneCards Identifiers for TFAP2A-AS1 Gene

  • GC06P010417
  • GC06P010419
  • GC06P010416
  • GC06P010418
  • GC06P010420
  • GC06P010421
  • GC06P010422
  • GC06P010423
  • GC06P010424

Summaries for TFAP2A-AS1 Gene

GeneCards Summary for TFAP2A-AS1 Gene

TFAP2A-AS1 (TFAP2A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TFAP2A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TFAP2A-AS1 Gene

Genomics for TFAP2A-AS1 Gene

GeneHancer (GH) Regulatory Elements for TFAP2A-AS1 Gene

Promoters and enhancers for TFAP2A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I010398 Promoter/Enhancer 3.4 VISTA UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.6 555 22.9 FEZF1 ZNF213 ZNF143 ZNF548 ZNF263 SP3 MEF2D ZNF610 GLIS1 NBN TFAP2A TFAP2A-AS1 RNA5SP203 ERVFRD-1 PAK1IP1 TMEM14C TMEM14B C6orf52
GH06I011042 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 20 +634.2 634167 2.3 PKNOX1 ARNT ZNF133 ARID4B SIN3A GLI4 ZNF2 ZNF48 ZNF766 GLIS2 ELOVL2 ELOVL2-AS1 PIR47110 RNA5SP203 TFAP2A-AS1 SYCP2L GCM2 ENSG00000235051 HIVEP1 ERVFRD-1
GH06I011143 Enhancer 1.6 FANTOM5 Ensembl ENCODE 19.5 +734.7 734730 1.9 PKNOX1 FOXA2 MLX ARNT ARID4B DMAP1 ZNF2 IRF4 SLC30A9 ZNF766 TFAP2A-AS1 ENSG00000247925 HIVEP1 TMEM170B NEDD9 C6orf52 GC06P011137 ENSG00000271245
GH06I011315 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +908.2 908178 4.4 HDGF FOXA2 ARID4B SIN3A DMAP1 FOS DEK SP5 JUNB ZHX2 TFAP2A-AS1 TMEM170B NEDD9 MAK LOC105374925 GC06M011330
GH06I010382 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -25.9 -25891 2.7 SUZ12 MAX BACH1 ZKSCAN1 E2F1 GATA3 POLR2A MAFK E2F6 EZH2 TFAP2A TFAP2A-AS1 ENSG00000228478 LOC442161
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TFAP2A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TFAP2A-AS1 Gene

Genomic Locations for TFAP2A-AS1 Gene
chr6:10,409,340-10,416,446
(GRCh38/hg38)
Size:
7,107 bases
Orientation:
Plus strand
chr6:10,409,573-10,416,679
(GRCh37/hg19)

Genomic View for TFAP2A-AS1 Gene

Genes around TFAP2A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TFAP2A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TFAP2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TFAP2A-AS1 Gene

Proteins for TFAP2A-AS1 Gene

Post-translational modifications for TFAP2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TFAP2A-AS1 Gene

Domains & Families for TFAP2A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TFAP2A-AS1 Gene

Function for TFAP2A-AS1 Gene

Phenotypes From GWAS Catalog for TFAP2A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TFAP2A-AS1 Gene

Localization for TFAP2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TFAP2A-AS1 Gene

Pathways & Interactions for TFAP2A-AS1 Gene

SuperPathways for TFAP2A-AS1 Gene

No Data Available

Interacting Proteins for TFAP2A-AS1 Gene

Gene Ontology (GO) - Biological Process for TFAP2A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TFAP2A-AS1 Gene

Drugs & Compounds for TFAP2A-AS1 Gene

No Compound Related Data Available

Transcripts for TFAP2A-AS1 Gene

mRNA/cDNA for TFAP2A-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TFAP2A-AS1 Gene

No ASD Table

Relevant External Links for TFAP2A-AS1 Gene

GeneLoc Exon Structure for
TFAP2A-AS1
ECgene alternative splicing isoforms for
TFAP2A-AS1

Expression for TFAP2A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TFAP2A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TFAP2A-AS1 Gene

This gene is overexpressed in Prostate (x9.3), Skin - Not Sun Exposed (Suprapubic) (x4.4), and Skin - Sun Exposed (Lower leg) (x4.0).
genes like me logo Genes that share expression patterns with TFAP2A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TFAP2A-AS1 Gene

Orthologs for TFAP2A-AS1 Gene

Evolution for TFAP2A-AS1 Gene

ENSEMBL:
Gene Tree for TFAP2A-AS1 (if available)
TreeFam:
Gene Tree for TFAP2A-AS1 (if available)

No data available for Orthologs for TFAP2A-AS1 Gene

Paralogs for TFAP2A-AS1 Gene

No data available for Paralogs for TFAP2A-AS1 Gene

Variants for TFAP2A-AS1 Gene

Sequence variations from dbSNP and Humsavar for TFAP2A-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000280976 -- 10,415,087(+) A/T intron_variant
rs1000493491 -- 10,415,249(+) G/C intron_variant
rs1000817718 -- 10,410,716(+) T/C upstream_transcript_variant
rs1000857661 -- 10,415,205(+) C/T intron_variant
rs1001278287 -- 10,415,533(+) G/A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TFAP2A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2667708 CNV deletion 23128226
nsv1022072 CNV gain 25217958

Additional Variant Information for TFAP2A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TFAP2A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TFAP2A-AS1 Gene

Disorders for TFAP2A-AS1 Gene

Additional Disease Information for TFAP2A-AS1

No disorders were found for TFAP2A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TFAP2A-AS1 Gene

Publications for TFAP2A-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TFAP2A-AS1 Gene

Sources for TFAP2A-AS1 Gene

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