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Aliases for TFAMP1 Gene

Subcategory (RNA class) for TFAMP1 Gene

lncRNA

Aliases for TFAMP1 Gene

  • Transcription Factor A, Mitochondrial Pseudogene 1 2 3 5
  • Transcription Factor 6-Like 1 (Mitochondrial Transcription Factor 1-Like) 2 3
  • Processed Pseudogene MtTFA 1 3
  • TCF6L1 3
  • MTTF1 3

External Ids for TFAMP1 Gene

ORGUL Members for TFAMP1 Gene

Previous HGNC Symbols for TFAMP1 Gene

  • TCF6L1

Previous GeneCards Identifiers for TFAMP1 Gene

  • GC07P001623
  • GC07P001573
  • GC07P001654

Summaries for TFAMP1 Gene

GeneCards Summary for TFAMP1 Gene

TFAMP1 (Transcription Factor A, Mitochondrial Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for TFAMP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TFAMP1 Gene

Genomics for TFAMP1 Gene

GeneHancer (GH) Regulatory Elements for TFAMP1 Gene

Promoters and enhancers for TFAMP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I001157 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 4.8 -454.7 -454699 3.7 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 E2F8 ZNF207 ZNF143 FOS LOC101927021 ZFAND2A GC07P001161 LOC105375120 ENSG00000225981 INTS1 TFAMP1 C7orf50
GH07I001169 Enhancer 1.4 Ensembl ENCODE dbSUPER 4.9 -444.5 -444506 1.3 PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF48 YY1 SLC30A9 POLR2B ZNF143 LOC101927021 LOC105375120 C7orf50 TFAMP1 GC07P001163 GC07P001203
GH07I001611 Enhancer 0.5 ENCODE 0.8 -2.7 -2668 1.1 STAT1 JUND POLR2A STAT3 CEBPB PSMG3-AS1 TFAMP1 PIR54140
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TFAMP1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TFAMP1 gene promoter:

Genomic Locations for TFAMP1 Gene

Genomic Locations for TFAMP1 Gene
chr7:1,614,470-1,616,692
(GRCh38/hg38)
Size:
2,223 bases
Orientation:
Plus strand
chr7:1,654,106-1,656,328
(GRCh37/hg19)

Genomic View for TFAMP1 Gene

Genes around TFAMP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TFAMP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TFAMP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TFAMP1 Gene

Proteins for TFAMP1 Gene

Post-translational modifications for TFAMP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TFAMP1 Gene

Domains & Families for TFAMP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TFAMP1 Gene

Function for TFAMP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TFAMP1 Gene

Localization for TFAMP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TFAMP1 Gene

Pathways & Interactions for TFAMP1 Gene

SuperPathways for TFAMP1 Gene

No Data Available

Interacting Proteins for TFAMP1 Gene

Gene Ontology (GO) - Biological Process for TFAMP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TFAMP1 Gene

Drugs & Compounds for TFAMP1 Gene

No Compound Related Data Available

Transcripts for TFAMP1 Gene

mRNA/cDNA for TFAMP1 Gene

(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TFAMP1 Gene

Transcription factor A, mitochondrial pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TFAMP1 Gene

No ASD Table

Relevant External Links for TFAMP1 Gene

GeneLoc Exon Structure for
TFAMP1
ECgene alternative splicing isoforms for
TFAMP1

Expression for TFAMP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TFAMP1 Gene

mRNA differential expression in normal tissues according to GTEx for TFAMP1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x7.0), Brain - Cerebellum (x5.8), Brain - Caudate (basal ganglia) (x4.7), and Brain - Putamen (basal ganglia) (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of TFAMP1 Gene:

TFAMP1

SOURCE GeneReport for Unigene cluster for TFAMP1 Gene:

Hs.534596
genes like me logo Genes that share expression patterns with TFAMP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TFAMP1 Gene

Orthologs for TFAMP1 Gene

Evolution for TFAMP1 Gene

ENSEMBL:
Gene Tree for TFAMP1 (if available)
TreeFam:
Gene Tree for TFAMP1 (if available)

No data available for Orthologs for TFAMP1 Gene

Paralogs for TFAMP1 Gene

No data available for Paralogs for TFAMP1 Gene

Variants for TFAMP1 Gene

Sequence variations from dbSNP and Humsavar for TFAMP1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000339689 -- 1,612,565(+) G/A upstream_transcript_variant
rs1000384775 -- 1,612,768(+) C/G/T upstream_transcript_variant
rs1000523334 -- 1,615,431(+) A/G non_coding_transcript_variant
rs1001126403 -- 1,614,019(+) T/C upstream_transcript_variant
rs1002266385 -- 1,613,178(+) TCTTTCTTT/TCTTT upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TFAMP1 Gene

Variant ID Type Subtype PubMed ID
esv2759499 CNV loss 17122850
nsv464248 CNV gain 19166990
nsv605825 CNV gain 21841781
nsv830879 CNV gain+loss 17160897
nsv830880 CNV loss 17160897
nsv950786 CNV deletion 24416366

Additional Variant Information for TFAMP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TFAMP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TFAMP1 Gene

Disorders for TFAMP1 Gene

Additional Disease Information for TFAMP1

No disorders were found for TFAMP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TFAMP1 Gene

Publications for TFAMP1 Gene

  1. Human mitochondrial transcription factor A (mtTFA): gene structure and characterization of related pseudogenes. (PMID: 12095695) Reyes A … Gadaleta G (Gene 2002) 3 58
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58
  3. Smaller isoform of human mitochondrial transcription factor 1: its wide distribution and production by alternative splicing. (PMID: 8333869) Tominaga K … Ohta S (Biochemical and biophysical research communications 1993) 3 58
  4. Similarity of human mitochondrial transcription factor 1 to high mobility group proteins. (PMID: 2035027) Parisi MA … Clayton DA (Science (New York, N.Y.) 1991) 3 58

Products for TFAMP1 Gene

Sources for TFAMP1 Gene

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