Aliases for TEX46 Gene

Aliases for TEX46 Gene

  • Testis Expressed 46 2 3 5
  • Testis-Expressed Protein 46 3 4
  • C1orf234 3 4
  • Chromosome 1 Open Reading Frame 234 2
  • Uncharacterized Protein C1orf234 3
  • TEX46 5
  • TEX# 3

External Ids for TEX46 Gene

Previous HGNC Symbols for TEX46 Gene

  • C1orf234

Summaries for TEX46 Gene

GeneCards Summary for TEX46 Gene

TEX46 (Testis Expressed 46) is a Protein Coding gene.

Additional gene information for TEX46 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TEX46 Gene

Genomics for TEX46 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TEX46 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J023013 Enhancer 0.5 Ensembl 600.7 +1.1 1052 3.2 RFX1 ZIC2 RFX3 EGR1 BMI1 ZKSCAN1 SPI1 POLR2A HSALNG0001611 TEX46 LACTBL1 HTR1D LUZP1
GH01J023036 Enhancer 0.9 Ensembl ENCODE 12.3 -21.8 -21848 5.8 ATF7 PRDM10 PRDM1 ZIC2 POLR2A ZNF600 CEBPA ZNF561 KLF9 ZXDB TEX46 LACTBL1 RNU6-135P RNU6-514P HTR1D LUZP1 L13714-003 KDM1A ENSG00000240553
GH01J023184 Enhancer 0.7 ENCODE 10.2 -169.0 -168991 0.2 CTCF ZNF692 REST RAD21 TRIM22 ZNF341 KLF9 ZNF524 MTA3 SMC3 piR-42491-003 RNU6-135P RNU6-514P KDM1A TEX46 LACTBL1 LUZP1 lnc-LUZP1-2 HTR1D
GH01J022990 Enhancer 0.5 Ensembl 12.2 +25.1 25051 0.8 CEBPG ATF4 CEBPB ATF3 ATF7 TEX46 KDM1A piR-50443-006 lnc-KDM1A-1 LACTBL1
GH01J022153 Enhancer 0.4 dbSUPER 4.7 +861.8 861829 1.7 ZFHX2 EGR2 GATA2 TEX46 HSPG2 piR-56759-009 ENSG00000285873 LOC105376845 WNT4 ZBTB40
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TEX46 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for TEX46

Genomic Locations for TEX46 Gene

Genomic Locations for TEX46 Gene
chr1:23,010,834-23,015,852
(GRCh38/hg38)
Size:
5,019 bases
Orientation:
Minus strand
chr1:23,337,327-23,342,343
(GRCh37/hg19)
Size:
5,017 bases
Orientation:
Minus strand

Genomic View for TEX46 Gene

Genes around TEX46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX46 Gene

Proteins for TEX46 Gene

  • Protein details for TEX46 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BTG2-TEX46_HUMAN
    Recommended name:
    Testis-expressed protein 46
    Protein Accession:
    H3BTG2
    Secondary Accessions:
    • H3BR39

    Protein attributes for TEX46 Gene

    Size:
    121 amino acids
    Molecular mass:
    14053 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BX377446; Type=Frameshift; Evidence={ECO:0000305};

    Alternative splice isoforms for TEX46 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TEX46 Gene

Post-translational modifications for TEX46 Gene

No Post-translational modifications

Other Protein References for TEX46 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEX46 Gene

Domains & Families for TEX46 Gene

Gene Families for TEX46 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TEX46 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with TEX46: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TEX46 Gene

Function for TEX46 Gene

Phenotypes From GWAS Catalog for TEX46 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX46 Gene

Localization for TEX46 Gene

Gene Ontology (GO) - Cellular Components for TEX46 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TEX46: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for TEX46 Gene

Pathways & Interactions for TEX46 Gene

PathCards logo

SuperPathways for TEX46 Gene

No Data Available

Interacting Proteins for TEX46 Gene

Gene Ontology (GO) - Biological Process for TEX46 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX46 Gene

Drugs & Compounds for TEX46 Gene

No Compound Related Data Available

Transcripts for TEX46 Gene

mRNA/cDNA for TEX46 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TEX46 Gene

No ASD Table

Relevant External Links for TEX46 Gene

GeneLoc Exon Structure for
TEX46

Expression for TEX46 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TEX46

mRNA Expression by UniProt/SwissProt for TEX46 Gene:

H3BTG2-TEX46_HUMAN
Tissue specificity: Testis-specific.

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX46 Gene

Orthologs for TEX46 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX46 Gene

Organism Taxonomy Gene Similarity Type Details
Mouse
(Mus musculus)
Mammalia 4930549C01Rik 30 31
  • 73.89 (n)
OneToOne
Tex46 17
Rat
(Rattus norvegicus)
Mammalia LOC102552669 30
  • 70 (n)
Dog
(Canis familiaris)
Mammalia C1orf234 31
  • 54 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia C1orf234 31
  • 31 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia C1orf234 31
  • 30 (a)
OneToOne
Species where no ortholog for TEX46 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for TEX46 Gene

ENSEMBL:
Gene Tree for TEX46 (if available)
TreeFam:
Gene Tree for TEX46 (if available)

Paralogs for TEX46 Gene

No data available for Paralogs for TEX46 Gene

Variants for TEX46 Gene

Additional dbSNP identifiers (rs#s) for TEX46 Gene

Structural Variations from Database of Genomic Variants (DGV) for TEX46 Gene

Variant ID Type Subtype PubMed ID
nsv819213 CNV loss 19587683

Additional Variant Information for TEX46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX46

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TEX46 Gene

Disorders for TEX46 Gene

No disorders were found for TEX46 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX46 Gene

Publications for TEX46 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4

Products for TEX46 Gene

Sources for TEX46 Gene