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Aliases for TEX38 Gene

Aliases for TEX38 Gene

  • Testis Expressed 38 2 3 5
  • ATPAF1 Antisense RNA 1 2 3 4
  • Testis Highly Expressed Protein 4 2 3
  • ATPAF1 Antisense Gene Protein 1 3 4
  • ATPAF1-AS1 3 4
  • C1orf223 3 4
  • ATPAF1 Antisense RNA 1 (Non-Protein Coding) 2
  • Testis-Expressed Sequence 38 Protein 3
  • Chromosome 1 Open Reading Frame 223 2
  • Testis-Expressed Protein 38 3
  • THEG4 3

External Ids for TEX38 Gene

Previous HGNC Symbols for TEX38 Gene

  • C1orf223
  • ATPAF1-AS1

Previous GeneCards Identifiers for TEX38 Gene

  • GC01P047134

Summaries for TEX38 Gene

GeneCards Summary for TEX38 Gene

TEX38 (Testis Expressed 38) is a Protein Coding gene.

Additional gene information for TEX38 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX38 Gene

Genomics for TEX38 Gene

GeneHancer (GH) Regulatory Elements for TEX38 Gene

Promoters and enhancers for TEX38 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J046667 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 650.7 -0.4 -384 2.3 HDGF ARNT SIN3A ZNF2 ZNF48 YY1 ZNF207 ZNF143 ATF7 SP3 TEX38 ATPAF1 EFCAB14 NENFP1
GH01J046671 Promoter 0.5 EPDnew 650.7 +3.0 2980 0.1 TEX38 ATPAF1
GH01J046717 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.1 +49.9 49930 3.3 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 EFCAB14 PIR52630 LRRC41 EFCAB14-AS1 NSUN4 LINC01389 TEX38 CYP4B1 MOB3C ATPAF1
GH01J046170 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.9 -495.5 -495527 5 HDGF PKNOX1 CLOCK ATF1 SMAD1 SIN3A GLIS2 ATF7 YY2 NCOA1 TSPAN1 NASP LRRC41 TOE1 NSUN4 MUTYH TEX38 LURAP1 RPL7AP16 RPS15AP10
GH01J047024 Promoter 1.2 EPDnew 20.5 +354.7 354701 0.1 FEZF1 ZNF2 YY1 GLIS2 ZNF213 SP3 YY2 REST TSHZ1 ZNF488 CYP4X1 NSUN4 TEX38 LRRC41 GC01M047004 CYP4Z1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TEX38 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TEX38 Gene

Genomic Locations for TEX38 Gene
chr1:46,668,855-46,673,594
(GRCh38/hg38)
Size:
4,740 bases
Orientation:
Plus strand
chr1:47,134,527-47,139,266
(GRCh37/hg19)

Genomic View for TEX38 Gene

Genes around TEX38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX38 Gene

Proteins for TEX38 Gene

  • Protein details for TEX38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PEX7-TEX38_HUMAN
    Recommended name:
    Testis-expressed protein 38
    Protein Accession:
    Q6PEX7
    Secondary Accessions:
    • A1A4F8

    Protein attributes for TEX38 Gene

    Size:
    206 amino acids
    Molecular mass:
    23280 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH57818.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI26319.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for TEX38 Gene

Post-translational modifications for TEX38 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TEX38 Gene

No data available for DME Specific Peptides for TEX38 Gene

Domains & Families for TEX38 Gene

Gene Families for TEX38 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for TEX38 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TEX38 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX38: view

No data available for UniProtKB/Swiss-Prot for TEX38 Gene

Function for TEX38 Gene

genes like me logo Genes that share phenotypes with TEX38: view

Animal Model Products

miRNA for TEX38 Gene

miRTarBase miRNAs that target TEX38

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TEX38 Gene

Localization for TEX38 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TEX38 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for TEX38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TEX38: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for TEX38 Gene

Pathways & Interactions for TEX38 Gene

SuperPathways for TEX38 Gene

No Data Available

Interacting Proteins for TEX38 Gene

Gene Ontology (GO) - Biological Process for TEX38 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX38 Gene

Drugs & Compounds for TEX38 Gene

No Compound Related Data Available

Transcripts for TEX38 Gene

mRNA/cDNA for TEX38 Gene

(14) Selected AceView cDNA sequences:
(6) Additional mRNA sequences :
(4) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TEX38 Gene

Testis expressed 38:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX38 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c
SP1:
SP2: -

Relevant External Links for TEX38 Gene

GeneLoc Exon Structure for
TEX38
ECgene alternative splicing isoforms for
TEX38

Expression for TEX38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TEX38 Gene

mRNA differential expression in normal tissues according to GTEx for TEX38 Gene

This gene is overexpressed in Testis (x46.9).

Protein differential expression in normal tissues from HIPED for TEX38 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TEX38 Gene



Protein tissue co-expression partners for TEX38 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TEX38 Gene:

TEX38

SOURCE GeneReport for Unigene cluster for TEX38 Gene:

Hs.443299
genes like me logo Genes that share expression patterns with TEX38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX38 Gene

Orthologs for TEX38 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX38 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX38 33
  • 98.06 (n)
cow
(Bos Taurus)
Mammalia ATPAF1-AS1 33
  • 85.92 (n)
TEX38 34
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TEX38 34 33
  • 84.14 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Tex38 16 34 33
  • 79.73 (n)
rat
(Rattus norvegicus)
Mammalia Tex38 33
  • 79.73 (n)
oppossum
(Monodelphis domestica)
Mammalia TEX38 34
  • 56 (a)
OneToOne
Species where no ortholog for TEX38 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX38 Gene

ENSEMBL:
Gene Tree for TEX38 (if available)
TreeFam:
Gene Tree for TEX38 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for TEX38: view image

Paralogs for TEX38 Gene

(2) SIMAP similar genes for TEX38 Gene using alignment to 2 proteins:

  • TEX38_HUMAN
  • H3BTK6_HUMAN
genes like me logo Genes that share paralogs with TEX38: view

No data available for Paralogs for TEX38 Gene

Variants for TEX38 Gene

Sequence variations from dbSNP and Humsavar for TEX38 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000167873 -- 46,673,425(+) T/G coding_sequence_variant, missense_variant
rs1000274259 -- 46,674,062(+) A/T downstream_transcript_variant
rs1000334676 -- 46,669,985(+) G/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000727481 -- 46,673,748(+) G/A downstream_transcript_variant
rs1002061756 -- 46,670,629(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Variation tolerance for TEX38 Gene

Gene Damage Index Score: 8.88; 87.04% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TEX38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX38

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TEX38 Gene

Disorders for TEX38 Gene

Additional Disease Information for TEX38

No disorders were found for TEX38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX38 Gene

Publications for TEX38 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Image-based genome-wide siRNA screen identifies selective autophagy factors. (PMID: 22020285) Orvedahl A … Levine B (Nature 2011) 3 58
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58

Products for TEX38 Gene

Sources for TEX38 Gene

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